SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15985

Length: 775 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15985

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4239	8/9

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 40 [Arabidopsis thaliana] sp\|Q9SQV1.1\|RH40_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 40 gb\|AAF08584.1\|AC011623_17 putative RNA helicase [Arabidopsis thaliana] gb\|AEE74400.1\| DEAD-box ATP-dependent RNA heli	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	dead-box atp-dependent rna helicase 14	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	ATP catabolic process	GO:0006200	Biological Process	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	85%
Blast2go	ATP-dependent RNA helicase activity	GO:0004004	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	DNA polymerase alpha/epsilon, subunit B	IPR007185	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	-

Full-Lengther Next Prediction

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
100		33	66		0.997452
105		33	66		0.997452
106	66	33			0.997452
111		33		66	0.997452
112		33	66		0.997452
113	33		66		0.997452
114	33	66			0.997452
116	33		66		0.997452
117		33		66	0.997452
118	33	66			0.997452
122	33			66	0.997452
128	33			66	0.997452
252	16		83		0.994512
253		16	83		0.994512
255		83		16	0.994512
256		83		16	0.994512
257	83		16		0.994512
258	83		16		0.994512
260			83	16	0.994512
266	14			85	0.993533
306			80	20	0.995493
332	83		16		0.994512
335	83		16		0.994512
336	83			16	0.994512
338		16	83		0.994512
339	83	16			0.994512
342	83		16		0.994512
343		83	16		0.994512
344	83	16			0.994512
350		16	83		0.994512
351	16			83	0.994512
405	83	16			0.994512
408		16		83	0.994512
410	83			16	0.994512
411			16	83	0.994512
413		16		83	0.994512
414		16		83	0.994512
415			83	16	0.994512
417			16	83	0.994512
419		16		83	0.994512
422		83		16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain