SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15964

Length: 1149 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15964

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15314	34/64
SustainPine v2.0	sp_v2.0_unigene26056	5/64
SustainPine v2.0	sp_v2.0_unigene76784	23/64

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PA multi-domain protein	-	-	6.0e-12	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	vacuolar sorting receptor	-	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to vacuole	GO:0006623	Biological Process	87%
Blast2go	Golgi transport complex	GO:0017119	Cellular Component	87%
Blast2go	vacuole	GO:0005773	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protease-associated domain, PA	IPR003137	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPV3

Fln msg: Distance to subject end: 415 aas, your sequence is shorter than subject: 220 - 635

Fln protein: MAGRGFQGMNYSYCLAAVLLVIISLTTMAMAKFVVEKNSLKVLSPDNIKGTYDSAIGNFGIPQYGGTMVGTAVYPKENQNGCKTFDTFNIEFKSKPGGLPNVVLVNRGDCYFALKVWNAQNAGAAAVLVSDDREEPLITMDSPEEDSSAAEYLQNITIPSALIEKEFGDKLKGAINKGDMVNINLDWRESVPHPDDRVEYELWTNSNDECGSKCDTQLEF

Protein Length: 221

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTGCATTCCAATATTTGCTGCTTGGGATTGAACCGGCCAGGGATGATCCAAACCCTCACTCTACAAAACCTAGTGACGATGCCAGAGCTCTGGATATTGTGTCTGGTTCTGCGCTAAATCGGCTTAATTCGATCCACGGAAATGCTTTGCGACTAACGCAGCATGTCGAAGCGAACACATTTATGTCCGATTCGCAGAAAACAAGGCTGTCAACCATTTATTCCAAGTTTGCTAACAACTGCTGAATCCCGAAAACCGGTCAAGCAATTGTCGGTTTTAATTGGATCTGCAATCTGCTTTCTTAAATTGGCGGTCTTAGTGCAGCATGCATATTTGTGGCCTTTTGAGAACTTTTCTTTTGCTGTATAGGGTTTGCTTATAAATAATCTGCTTGGCGATTTGCGGGGATTAATCTTCTTAGCCGCGAATTAAAACGTTTCACTGTTAATTTCTTCTCCAAAG_-_ATGGCGGGAAGAGGGTTTCAGGGTATGAATTACAGTTACTGTCTGGCCGCGGTGTTATTGGTGATAATCTCTTTGACGACCATGGCTATGGCGAAATTTGTGGTGGAGAAGAACAGCTTGAAAGTTCTCTCTCCGGATAATATTAAGGGCACTTATGACAGTGCTATAGGCAATTTTGGGATCCCTCAGTATGGTGGAACCATGGTCGGTACGGCTGTTTATCCGAAGGAGAATCAGAATGGCTGTAAGACTTTCGATACTTTTAATATTGAGTTTAAATCGAAGCCGGGAGGGCTTCCTAATGTCGTGCTGGTTAACCGTGGAGATTGTTATTTTGCTTTGAAAGTTTGGAATGCTCAGAATGCTGGTGCAGCAGCTGTTCTTGTTTCTGATGATAGAGAAGAGCCATTGATAACTATGGATTCTCCTGAAGAAGATAGTTCGGCAGCGGAATATCTGCAGAATATCACCATTCCTTCTGCCCTTATTGAGAAAGAGTTTGGAGACAAGCTGAAGGGGGCTATCAACAAGGGTGACATGGTTAATATTAATTTAGACTGGAGGGAGTCTGTTCCTCATCCAGATGATCGTGTGGAGTATGAGTTGTGGACAAATAGCAATGATGAATGTGGGTCAAAGTGTGATACACAACTGGAATTTA

Fln Alignment:

Contig15964___MAGRGFQGMNYSYCLAAVLLVIISLTTMAMAKFVVEKNSLKVLSPDNIKGTYDSAIGNFGIPQYGGTMVGTAVYPKENQNGCKTFDTFNIEFKSKPGGLPNVVLVNRGDCYFALKVWNAQNAGAAAVLVSDDREEPLITMDSPEEDSSAAEYLQNITIPSALIEKEFGDKLKGAINKGDMVNINLDWRESVPHPDDRVEYELWTNSNDECGSKCDTQLEF
B8LPV3________________MAGRGFQGMNYSYGLVAVLLVIIYLKTMAMAKFVVEKNSLRVLSPENIKGNYDSAIGNFGIPQYGGTMVGTAVYPKENQNGCKTFDTFEISFKSKPGGLPNVVLVNRGDCYFALKVWNAQNAGAAAVLVSDDRDEPLITMDSPEEDSSAAEYLQNITIPSALIEKAFGDKLKVAINKGDMVNINLDWRESVPHPDDRVEYELWTNSNDECGAKCDTQLEF

SNPs (tot: 85)

Position	A %	C %	G %	T %	Probability
16		16		83	0.994512
21		83	16		0.994512
23		83	16		0.994512
25	33	16			1.0
26	50	16		33	1.0
30		83	16		0.994512
31	83	16			0.994512
33			16	83	0.994512
34		83		16	0.994512
37	83	16			0.994512
39	83	16			0.994512
41	16			83	0.994512
43	16			83	0.994512
97		81	18		0.999994
99	81	18			0.999994
104		18	81		0.999994
105	81			18	0.999994
107		81	18		0.999994
109	81			18	0.999994
112			81	18	0.999994
114	18			81	0.999994
117			72	9	0.999994
118		18	81		0.999994
220		69		30	1.0
221	69	30			1.0
223	69			30	1.0
224	69		30		1.0
226	69	30			1.0
228	30			30	1.0
229	38			30	1.0
236		30	30		1.0
237	69			30	1.0
238	30	69			1.0
239		30		30	1.0
450		54		45	1.0
494		14	85		0.999981
496	85			14	0.999981
497	80	20			1.0
499	78	7		14	0.999974
501	14		78	7	0.999974
502		14	85		0.999981
503	7	14		78	0.999974
506		78		7	0.999974
507	78			7	0.999974
510		21	78		1.0
512	78		21		1.0
514		21	78		1.0
516	78	21			1.0
518		21		78	1.0
581	87			12	0.999964
582	87	12			0.999964
679		57		42	1.0
706		13		86	0.999973
717	87	12			0.999964
719	88	11			0.999952
720	88		11		0.999952
722		88	11		0.999952
724		12	87		0.999964
725	87	12			0.999964
726	87			12	0.999964
735	87	12			0.999964
736	12		87		0.999964
846	83		11		0.999887
847			88	11	0.999937
848	83		11	5	0.999887
850	5	11		83	0.999887
851		16	83		1.0
852		88		11	0.999937
862	88			11	0.999937
863		11	83		0.999887
864	11	88			0.999937
937			47	52	1.0
1014	90		10		0.90298
1083			75	25	1.0
1084	75	25			1.0
1086		25		75	1.0
1093	16			83	0.994512
1094		16	83		0.994512
1095	16			83	0.994512
1098	80	20			0.995493
1101	80	20			0.995493
1102	80			20	0.995493
1103			20	80	0.995493
1108	80	20			0.995493
1111	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain