SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15960

Length: 443 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene15960
CGTCGTGACCTTGGCTGTCACTCAATAAAACCTATCAAGAATTGCGGTTAATTGGTTATTCCATTCCATTCCATTATCTACACAGCGCAGCAGAGGAATCTTTCATCATAGTTTTAGATCTGATCTACTTTGCATCGGGTTGTGAGGCTTGGACGATCATGGCAAGCAAAGTACTTGTTCGGCAGCTTTTCATAGATGGCGAATGGAGAGCCCCTCTCAAGGAAAAACGCCTTCCAGTCATAAATCCCGCCACTGAAGAAACCATAGGTGAAATACCAGCTGCGACTGCAGAAGATGTTGAAGTTGCAGTTAAGGCTGCACGCGCAGCTTTTACACGAAATAGAGGAAAGGACTGGCCACGCACACCAGGTGCCTTTCGTGCTAAGTATCTGCGTGCTATAGCTTCAAAGGTACTGAAAGGAATCAGAATTAGCTGAGCTGGA

Ace file of the UniGene uagpf_v2_unigene15960 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7806	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Betaine aldehyde dehydrogenase 2, mitochondrial n=3 Tax=Brassicaceae RepID=BADH2_ARATH	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	betaine aldehyde dehydrogenase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	0.0	87%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010		87%
Blast2go	Pentose and glucuronate interconversions	00040		87%
Blast2go	Ascorbate and aldarate metabolism	00053		87%
Blast2go	Fatty acid metabolism	00071		87%
Blast2go	Valine, leucine and isoleucine degradation	00280		87%
Blast2go	Lysine degradation	00310		87%
Blast2go	Arginine and proline metabolism	00330		87%
Blast2go	Histidine metabolism	00340		87%
Blast2go	Tryptophan metabolism	00380		87%
Blast2go	beta-Alanine metabolism	00410		87%
Blast2go	Glycerolipid metabolism	00561		87%
Blast2go	Pyruvate metabolism	00620		87%
Blast2go	Chloroalkane and chloroalkene degradation	00625		87%
Blast2go	Propanoate metabolism	00640		87%
Blast2go	Limonene and pinene degradation	00903		87%
Blast2go	Metabolic pathways	01100		87%
Blast2go	Biosynthesis of secondary metabolites	01110		87%
Blast2go	Betaine-aldehyde dehydrogenase.	EC:1.2.1.8	-	87%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glycine, serine and threonine metabolism	00260		0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	87%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	87%
Blast2go	response to salt stress	GO:0009651	Biological Process	87%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	3-chloroallyl aldehyde dehydrogenase activity	GO:0004028	Molecular Function	87%
Blast2go	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	87%
Blast2go	betaine-aldehyde dehydrogenase activity	GO:0008802	Molecular Function	87%
Blast2go	peroxisome	GO:0005777	Cellular Component	87%
Blast2go	cell wall	GO:0005618	Cellular Component	87%
Blast2go	leucoplast	GO:0009516	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV02

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 408 aas, your sequence is shorter than subject: 93 - 503

Fln protein: MASKVLVRQLFIDGEWRAPLKEKRLPVINPATEETIGEIPAATAEDVEVAVKAARAAFTRNRGKDWPRTPGAFRAKYLRAIASKVLKGIRIS*

Protein Length: 94

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAAAACCTATCAAGAATTGCGGTTAATTGGTTATTCCATTCCATTCCATTATCTACACAGCGCAGCAGAGGAATCTTTCATCATAGTTTTAGATCTGATCTACTTTGCATCGGGTTGTGAGGCTTGGACGATC_-_ATGGCAAGCAAAGTACTTGTTCGGCAGCTTTTCATAGATGGCGAATGGAGAGCCCCTCTCAAGGAAAAACGCCTTCCAGTCATAAATCCCGCCACTGAAGAAACCATAGGTGAAATACCAGCTGCGACTGCAGAAGATGTTGAAGTTGCAGTTAAGGCTGCACGCGCAGCTTTTACACGAAATAGAGGAAAGGACTGGCCACGCACACCAGGTGCCTTTCGTGCTAAGTATCTGCGTGCTATAGCTTCAAAGGTACTGAAAGGAATCAGAATTAGCTGAGCTGGA

Fln Alignment:

Contig15960___MASKVLVRQLFIDGEWRAPLKEKRLPVINPATEETIGEIPAATAEDVEVAVKAARAAFTRNRGKDWPRTPGAFRAKYLRAIASKVLK
A9NV02________________MASKVPIRQLFIDGEWRAPLKGKRLPVINPTTEETIGEIPAATAEDVEIAIKAARVAFTRNRGKDWARTPGAFRAKYLRAIAAKVIE

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
343	71		28		1.0
344	71			28	1.0
347		28		71	1.0
348	28			71	1.0
349		71	28		1.0
351		28		71	1.0
352	28	71			1.0
353	28			71	1.0
355		71	28		1.0
357		28	71		1.0
361	28	71			1.0
362		28		71	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
369	386	AATGG AATGG AATGG AAT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
343	71		28		1.0
344	71			28	1.0
347		28		71	1.0
348	28			71	1.0
349		71	28		1.0
351		28		71	1.0
352	28	71			1.0
353	28			71	1.0
355		71	28		1.0
357		28	71		1.0
361	28	71			1.0
362		28		71	1.0

Position	A %	C %	G %	T %	Probability
343	71		28		1.0
344	71			28	1.0
347		28		71	1.0
348	28			71	1.0
349		71	28		1.0
351		28		71	1.0
352	28	71			1.0
353	28			71	1.0
355		71	28		1.0
357		28	71		1.0
361	28	71			1.0
362		28		71	1.0

Position	A %	C %	G %	T %	Probability
343	71		28		1.0
344	71			28	1.0
347		28		71	1.0
348	28			71	1.0
349		71	28		1.0
351		28		71	1.0
352	28	71			1.0
353	28			71	1.0
355		71	28		1.0
357		28	71		1.0
361	28	71			1.0
362		28		71	1.0