SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15947

Length: 824 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15947

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4254	11/11

Source	Descriptions	Term	Type	Identity
AutoFact	Cation/calcium exchanger 4 n=2 Tax=Arabidopsis RepID=CCX4_ARATH	-	-	55%
FL-Next	sp=Cation/calcium exchanger 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	cation calcium exchanger 4	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	cellular cation homeostasis	GO:0030003	Biological Process	73%
Blast2go	sodium ion export	GO:0071436	Biological Process	73%
Blast2go	response to cation stress	GO:0043157	Biological Process	73%
Blast2go	manganese ion transmembrane transport	GO:0071421	Biological Process	73%
Blast2go	sodium ion transmembrane transporter activity	GO:0015081	Molecular Function	73%
Blast2go	potassium ion transmembrane transporter activity	GO:0015079	Molecular Function	73%
Blast2go	manganese ion transmembrane transporter activity	GO:0005384	Molecular Function	73%
Blast2go	cation:cation antiporter activity	GO:0015491	Molecular Function	73%
Blast2go	cytoplasmic vesicle membrane	GO:0030659	Cellular Component	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	73%
Blast2go	potassium ion transmembrane transport	GO:0071805	Biological Process	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium/calcium exchanger membrane region	IPR004837	-	0.0	-
Sma3	Sugar transporter, conserved site	IPR005829	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
52		33		66	0.997452
56		33		66	0.997452
57	33		66		0.997452
58		33	66		0.997452
59	66			33	0.997452
60		33	66		0.997452
61	33		66		0.997452
69	75	25			0.996473
72	75		25		0.996473
77		25		75	0.996473
78	75	25			0.996473
87		25	75		0.996473
89			25	75	0.996473
91		25		75	0.996473
326		66	33		0.997452
327	33		66		0.997452
330		33	66		0.997452
333	66		33		0.997452
334		66		33	0.997452
336		33		66	0.997452
337	33			66	0.997452
338	33		66		0.997452
343	33			66	0.997452
351	66		33		0.997452
426		40	60		1.0
430	40		60		1.0
431		40		60	1.0
432		40		60	1.0
436		20	40	40	1.0
438		60		40	1.0
439	60		40		1.0
441		40	60		1.0
443	60	40			1.0
446	40		60		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain