SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15930

Length: 978 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15930

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15658	16/35
SustainPine v2.0	sp_v2.0_unigene16479	3/35
SustainPine v2.0	sp_v2.0_unigene23151	13/35
SustainPine v2.0	sp_v2.0_unigene78531	1/35

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pro-resilin n=3 Tax=Andropogoneae RepID=B6T4Q5_MAIZE	-	-	9.0e-26	30%
FL-Next	tr=Putative uncharacterized protein; Pinus halepensis (Aleppo pine).	-	-	0.0	75%
Blast2go	protein	-	-	0.0	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q5Y2E6

Fln msg: warning!, putative chimeric sequence! or repetitive structureUnexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 247 - 323

Fln protein: S*PWLSLRVVP*LFIWIGVMPLRRSTS*PWIEQKRPTYGSGSTPSYEAEESTDGGGGGGFDYGRPKPQSQPAYGYGHEPKPQPAYGYGHEPKPQPAYGSKPNPYGDQYEEKPSWDIPHQDYQSGYSDDKYGDEVKPSFGRRPSYGQQEEEIDPPRFGRPPVIMNSRRKNPLDFKGxxSYHQQEEEPPKFERPPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYKEPKHGHHHHHRKYSDE*

Protein Length: 248

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTCGTCCCATGACTTTTCATATGGATCGGAGTCATGCCCTTACGGAGGAGCACGTCGTGACCTTGGATAGAACAAAAGAGACCCACATATGGATCCGGATCCACCCCTTCCTATGAGGCAGAGGAATCCACTGATGGTGGTGGTGGTGGAGGATTTGATTATGGGAGGCCCAAGCCTCAGTCTCAGCCTGCATATGGGTATGGGCATGAGCCCAAGCCTCAGCCTGCATATGGGTATGGGCATGAGCCCAAGCCTCAGCCTGCATACGGGTCGAAGCCCAATCCATATGGAGATCAGTATGAGGAAAAGCCTAGCTGGGACATTCCACACCAGGATTACCAGTCTGGGTATTCTGACGATAAATACGGAGACGAGGTTAAGCCGAGTTTTGGAAGGAGGCCTAGCTATGGTCAGCAGGAGGAGGAAATAGATCCACCTAGGTTTGGGAGACCCCCAGTAATTATGAACAGCAGGAGGAAGAACCCCCTAGATTTCAAAGGCCCxxxTAGTTATCACCAGCAGGAGGAGGAGCCTCCCAAGTTCGAGAGACCCCCCAGTTACTATCAGCAGGAGGAGGAGCCTGCCAAGTCTGAGAGGCCCAGTTATTACCAACCTGACCAGGAAGAAGGAGGATATCAGCGCCCTCAATATGGCAATGACTATAAAGAACCCAAGCATGGACATCACCATCACCACCGCAAATATTCTGATGA___ATGATGTGAATAGCTAATGTTTTACTCACGAGTAAAACTTAACCATGGGGCATTGTCGTGCACACTCCAATAAGATTTCCTTTTAGCGCGGGAAATCCACTGCAATATTATAAATGCTATTTTTATAATATGTTGCTGATAAACTGGATGACTTGGGTATAAATTTCAATGGATATACTTACTACATATCACTTTAATGTTTAATATATAGCTAATAAAGTATTGTTTATATGTGAATTT

Fln Alignment:

Contig15930___IEQKRPTYGSGSTPSYEAEESTDXXXXXXFDYGRPKPQSQPAYGYGHEPKPQPAYGYGHEPKPQPAYGSKPNPYGDQYEEKPSWDIPHQDYQS-GYSDDKYGDEVKPSFGRRPSYGQQEEEIDPPRFGRPPVIMNSRRKNPLDFKGPxSYHQQEEEPPKFERPPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYKEPKXXXXXXXRKYSDE
Q5Y2E6________________IDEQRPTYGSGSTPSYEAEESTYVGGGGGSDYGRPKPQSQPAYGYGHEP------------EPQPAYGSKPNPYGDQYEEKPSWNIPHQDYTSPGYSDDKYGDEVKPSFGRKPSYGQQEEEIDPPRFGRPPSNYEQQEEEPPRFQRPxSYYQEEEEPPRFERPPSYYQQEEEPAKSERPSYYQPDQEEGGYQRPQYGNDYEEPKHGHHHHHRKYSDE

SNPs (tot: 81)

Position	A %	C %	G %	T %	Probability
79		66	33		0.997452
81	33			66	0.997452
82		66	33		0.997452
84	33			66	0.997452
86	66	33			0.997452
89	33			66	0.997452
93	33	66			1.0
95	33		66		1.0
97	33	66			1.0
98	66		33		0.997452
99	33	66			0.997452
101		66	33		0.997452
148	60	40			1.0
150	60			40	1.0
151		20	80		0.995493
152	20		80		0.995493
153	60	20		20	0.99255
154	60	20	20		0.99255
155	20			80	0.995493
156		88		11	0.923564
157		66	33		1.0
158	55		11	33	1.0
159		88		11	0.923564
161			11	88	0.923564
162			44	55	1.0
163	77	11		11	0.968132
164		33		66	1.0
165	11	22	66		0.999999
166		11	55	33	1.0
167		11		88	0.923564
168	11	11	77		0.968132
169	11	11	77		0.968132
170		22		77	0.999999
171		11	66	22	0.999999
172	11		77	11	0.968132
174		22	77		0.999999
175	22		77		0.999999
176		22		77	0.999999
177			77	22	0.999999
178		22	77		0.999999
220		90		10	0.90298
221	90			10	0.90298
222			10	90	0.90298
225			90	10	0.90298
226	10		90		0.90298
227			90	10	0.90298
228			10	90	0.90298
229	90		10		0.90298
230			10	90	0.90298
231	10		90		0.90298
235	90	10			0.90298
236		10		90	0.90298
237	10		90		0.90298
242		90		10	0.90298
243	90	10			0.90298
246		90		10	0.90298
278	20	80			0.999996
280	80		20		0.999996
348	12		87		0.992554
397			85	14	0.993533
443	16		83		0.994512
541	88		11		0.923564
545		22	66	11	0.999999
549		22	77		0.999999
551		15	84		0.999986
552			84	15	0.999986
553	84			15	0.999986
556	84	15			0.999986
557			84	15	0.999986
559	84			15	0.999986
560		15	84		0.999986
561	15	84			0.999986
566	15	84			0.999986
568	84		15		0.999986
652	91	8			0.999807
683	47	52			1.0
695	52		47		1.0
799		50		50	1.0
805		50		50	1.0
872	57		42		1.0
932		40	60		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
161	175	TGG TGG TGG TGG TGG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain