SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15761

Length: 898 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15761

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23050	4/34
SustainPine v2.0	sp_v2.0_unigene26548	8/34
SustainPine v2.0	sp_v2.0_unigene33713	21/34

Source	Descriptions	Term	Type	Identity
AutoFact	large subunit ribosomal protein L24e [Arabidopsis thaliana] ref\|NP_001078059.1\| large subunit ribosomal protein L24e [Arabidopsis thaliana] sp\|O22165.1\|RLP24_ARATH RecName: Full=Probable ribosome biogenesis protein RLP24 gb\|AAC31838.1\| 60S ribosomal prote	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	large subunit ribosomal protein l24e	-	-	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	0.0	83%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein L24e-related	IPR000988	-	0.0	-
Sma3	TRASH	IPR011017	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
43			16	83	0.994512
45		16	33	50	1.0
47	50	33		16	1.0
48			16	83	0.994512
50	50	16			1.0
51		66	33		1.0
53		33		66	1.0
54	83		16		0.994512
55		33	66		1.0
56	50			50	1.0
57		83	16		0.994512
58	83			16	0.994512
61	83	16			0.994512
62			83	16	0.994512
63	83	16			0.994512
67			83	16	0.994512
70	16	83			0.994512
121	14			85	0.993533
122		14		85	0.993533
128	85		14		0.993533
134	90		10		0.90298
135	90			10	0.90298
136		10		90	0.90298
137			10	90	0.90298
139	90		10		0.90298
140	10			90	0.90298
143		80		20	0.999996
144			90	10	0.90298
151			90	10	0.90298
152		10	90		0.90298
161		10		90	0.90298
164		90	10		0.90298
393		10	90		0.90298
400	83		16		0.999991
402			16	83	0.999991
404		16	83		0.999991
407	83			16	0.999991
410		18	81		0.999994
411	81			18	0.999994
413			81	18	0.999994
416		18		81	0.999994
417	81			18	0.999994
418	81	18			0.999994
475	88	11			0.923564
477	88			11	0.923564
480	88	11			0.923564
481		11		88	0.923564
483			88	11	0.923564
489			88	11	0.923564
491			88	11	0.923564
494		11		88	0.923564
798		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain