SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15733

Length: 543 nt

UniGene Fasta

>uagpf_v2_unigene15733
CGTCGTGACCTTGGCTGTCACTCAGTGAGAAAAAAAGAAGGTGGTGGTGATAAGAAGGATGGTGGAGAAAGCAAAAAGGGAGGGGATAATGAGAAGAAGGGTGGTGAGGAATCCAAAAGTGATGCTGAAGACAAGAAGGATGAAAGCAAGAAAAATGAAGCCCCTATTCCGAGATATGTCATTGAGCATGTTCATCCTCCTCAGCTTTTCAGTGATGAAAACCCAAATGCTTGTTCTATAATGTAACTCTCTTGGAGTACTATTCATAGATGTGTTTTGGGCAGACCTGAATCCTTGGGGAACTGAAAGGTTGTGATTTGAGGACATGAAGGTCCTATGAAGCCCACCAAAAGCAAATCAAATAAGCTGATAAGGAAGAATTACTAGCATGAATCTAGGCTAGGAGGGGTACTACAACACTAGGTACTTAGCAGCAACTTCAATGGTGGTTGTTTTTCTTCTTTTAGTGTACTAGTTTGAATTTTGAAGAGAAGAGATGGGTTTCAAGGAGGATATATGCTTAATTGATCAGATCAGCCGCAA

Ace file of the UniGene uagpf_v2_unigene15733

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7592	26/27

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00403, HMA, Heavy-metal-associated domain	-	-	1.0e-11	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	farnesylated protein 3	-	-	5.43413e-32	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	5.43413e-32	76%
Blast2go	cellular transition metal ion homeostasis	GO:0046916	Biological Process	5.43413e-32	76%
Blast2go	transition metal ion binding	GO:0046914	Molecular Function	5.43413e-32	76%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.43413e-32	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE69

Fln msg: your sequence is shorter than subject: 82 - 294

Fln protein: RRDLGCHSVRKKEGGGDKKDGGESKKGGDNEKKGGEESKSDAEDKKDESKKNEAPIPRYVIEHVHPPQLFSDENPNACSIM*

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGAGAAAAAAAGAAGGTGGTGGTGATAAGAAGGATGGTGGAGAAAGCAAAAAGGGAGGGGATAATGAGAAGAAGGGTGGTGAGGAATCCAAAAGTGATGCTGAAGACAAGAAGGATGAAAGCAAGAAAAATGAAGCCCCTATTCCGAGATATGTCATTGAGCATGTTCATCCTCCTCAGCTTTTCAGTGATGAAAACCCAAATGCTTGTTCTATAATGTAA___CTCTCTTGGAGTACTATTCATAGATGTGTTTTGGGCAGACCTGAATCCTTGGGGAACTGAAAGGTTGTGATTTGAGGACATGAAGGTCCTATGAAGCCCACCAAAAGCAAATCAAATAAGCTGATAAGGAAGAATTACTAGCATGAATCTAGGCTAGGAGGGGTACTACAACACTAGGTACTTAGCAGCAACTTCAATGGTGGTTGTTTTTCTTCTTTTAGTGTACTAGTTTGAATTTTGAAGAGAAGAGATGGGTTTCAAGGAGGATATATGCTTAATTGATCAGATCAGCCGCAA

Fln Alignment:

Contig15733___PIPRYVIEHVHPPQLFSDENPNACSIM
D5AE69________________PIPRYVIEYVHPPQLFSDENPNACSIM

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
172		26	73		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain