SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15654

Length: 736 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15654

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9297	16/16

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAC27402.2\| expressed protein [Arabidopsis thaliana] gb\|AAM65204.1\| unknown [Arabidopsis thaliana] dbj\|BAC42145.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63858.1\| putative G-protei	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	wd repeat-containing protein 55-like	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide binding	GO:0000166	Molecular Function	75%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	75%
Blast2go	heterotrimeric G-protein complex	GO:0005834	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
216		16	83		0.994512
217			16	83	0.994512
218		16		83	0.994512
219		83	16		0.994512
223	16		16	66	0.988813
224	16	16	66		0.988813
226		20		80	0.995493
228			20	80	0.995493
229	60		40		1.0
230		20	20	60	0.99255
231		20		80	0.995493
232		60	20	20	0.99255
233	60		20	20	0.99255
234		20		80	0.995493
235	20	20	60		0.99255
236	20	20	60		0.99255
237		20	60	20	0.99255
238		20	60	20	0.99255
239	20	20		60	0.99255
240	20			80	0.995493
281		60		40	1.0
296	40		60		1.0
308		60		40	1.0
320			60	40	1.0
338		14		85	0.993533
340			85	14	0.993533
341	85	14			0.993533
342	85		14		0.993533
344		85	14		0.993533
345	57	42			1.0
346		14		85	0.993533
348	85			14	0.993533
349			85	14	0.993533
352		14		85	0.993533
357	14			85	0.993533
381		15	84		0.999986
410	69			30	1.0
493	20		80		0.999996
532	20	80			0.999996
538	20	80			0.999996
545		80		20	0.999996
548		20		80	0.999996

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain