SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15594

Length: 675 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15594

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62563	4/12
SustainPine v2.0	sp_v2.0_unigene64101	4/12
SustainPine v2.0	sp_v2.0_unigene77494	4/12

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to cAMP response element-binding protein 5 n=1 Tax=Hydra magnipapillata RepID=UPI0001925AA1	-	-	2.0e-07	29%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Blast2go	camp response element-binding protein 5	-	-	5.12823e-09	41%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	RNA polymerase, N-terminal	IPR006592	-	-
Sma3	PT repeat	IPR006970	-	-
Sma3	RNA polymerase Rpb1, domain 3	IPR007066	-	-
Sma3	RNA polymerase Rpb1, domain 7	IPR007073	-	-
Sma3	RNA polymerase Rpb1, domain 6	IPR007075	-	-
Sma3	RNA polymerase Rpb1, domain 1	IPR007080	-	-
Sma3	RNA polymerase Rpb1, domain 5	IPR007081	-	-
Sma3	RNA polymerase Rpb1, domain 4	IPR007083	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
39	25		75		0.996473
42	25		75		0.996473
53		25		75	0.996473
54	25		75		0.996473
55	25			75	0.996473
56		75		25	0.996473
57	75			25	0.996473
58		75	25		0.996473
59			25	75	0.996473
276	85	14			0.993533
277	85		14		0.993533
279		14		85	0.993533
280			14	85	0.993533
282		85	14		0.993533
283	14			85	0.993533
286		85		14	0.993533
288	85	14			0.993533
292	14			85	0.993533
293		16	83		0.994512
294			83	16	0.994512
295		28	71		1.0
296	14		85		0.993533
297			85	14	0.993533
298	85	14			0.993533
299	85		14		0.993533
301			14	85	0.993533
302	14	85			0.993533
309		85	14		0.993533
312	14	85			0.993533
313	85	14			0.993533
316	14	85			0.993533
333			90	10	0.90298
335	10	90			0.90298
338		10		90	0.90298
339	10	90			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain