SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15518

Length: 894 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15518

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11078	13/19
SustainPine v2.0	sp_v2.0_unigene79662	4/19

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Homeobox-leucine zipper protein HOX15; AltName: Full=HD-ZIP protein HOX15; AltName: Full=Homeodomain transcription factor HOX15; AltName: Full=OsHox15 gb\|AAL91609.1\|AC099400_15 Putative homeobox protein HAT22 [Oryza sativa Japonica Group] gb	-	-	9.0e-21	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	homeobox-leucine zipper protein hat14	-	-	5.71408e-36	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	5.71408e-36	79%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	5.71408e-36	79%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	5.71408e-36	79%
Blast2go	sequence-specific DNA binding	GO:0043565	Molecular Function	5.71408e-36	79%
Blast2go	transcription activator activity	GO:0016563	Molecular Function	5.71408e-36	79%
Blast2go	nucleus	GO:0005634	Cellular Component	5.71408e-36	79%

Source	InterPros	Term	Type	Identity
Sma3	Helix-turn-helix motif	IPR000047	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	HD-ZIP protein, N-terminal	IPR006712	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NKN4

Fln msg: Distance to subject end: 55 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 248 - 309

Fln protein: MDQHCSADLSLRLGTGDGTATRENYGIYLSQRNVNGHPLQLDLFPVAPDSGCGTLPWENTSQSIGTDGVGKVRSEREAKDPIQVVAVSWRSDANKFPASCFSNDDARAINVSSSNSTVDSNATNPRNGYAEIKRKRVYDEELENDRVWSRVVGDVEEEGCSTKKLRLSREQCARLEESFRKNRVPEPKEKEALALQLNLRPRQVEVWFQNRRARTKLKKTEVDCELLKRYNEVLAEENRKLHTELEKL

Protein Length: 249

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTTAAGTAGTGAGAAGTCAGGCCGGACTCTAGATCCATCGCCCATTCTAGCTTCCTGCATAATACCTTTCTGCTTGCTTCGATCATTTCCACTCTATCGAAACATTAGGCAAAACAAAGGGTT_-_ATGGATCAGCATTGCAGTGCAGACCTTTCTTTACGTTTGGGTACCGGTGATGGGACAGCCACCAGAGAAAATTATGGAATATACCTTTCACAAAGAAATGTGAATGGACATCCTCTGCAGTTAGATCTGTTTCCAGTGGCCCCTGACTCTGGCTGCGGCACTTTGCCATGGGAGAATACCTCACAATCGATTGGGACCGATGGTGTCGGTAAGGTGAGATCAGAGAGAGAAGCGAAGGATCCGATCCAGGTGGTAGCTGTGTCATGGCGATCCGATGCCAACAAATTCCCTGCGTCATGTTTCTCCAACGATGATGCACGCGCCATTAATGTGTCGTCATCCAATAGCACCGTGGATTCCAACGCGACTAACCCTAGGAACGGGTATGCAGAGATCAAGCGAAAACGGGTCTATGACGAGGAGTTAGAGAATGACCGAGTTTGGTCGAGGGTAGTCGGCGATGTAGAAGAGGAAGGCTGTTCCACGAAGAAGCTTAGACTCTCTAGAGAGCAATGTGCTCGTTTGGAAGAAAGTTTCAGAAAGAACAGGGTACCCGAACCTAAGGAAAAGGAAGCGTTGGCCTTACAGTTAAATCTCCGTCCTCGACAAGTTGAGGTGTGGTTCCAGAATAGACGAGCAAGGACGAAGCTTAAGAAAACAGAAGTGGACTGCGAGCTTCTGAAAAGATATAATGAGGTACTTGCAGAAGAGAACAGAAAACTTCACACAGAGCTGGAGAAACTG

Fln Alignment:

Contig15518___KQRVMD-QHCSADLSLRLGTGDGTAT-RENYGIYLSQRNVNGHPLQLDLFPVAPDSGCGTLPWENTSQSIGTDGVGKVRSEREAKDPIQVVAVSWRSDANKFPASCFSNDDARAIXXXXXXXXXXXXXXXPRNG-------YA-EIKRKRVYDEELENDRVWSRVVGD-VEEEGCSTKKLRLSREQCARLEESFRKNRVPEPKEKEALALQLNLRPRQVEVWFQNRRARTKLKKTEVDCELLKRYNEVLAEENRKLHTELEKL
A9NKN4________________KQMGMDMEDCNTGLGLGMSIGLGIGLLRED--LHSHRHHVNGPPVQLDLLPLAPGLPSRDLPWGKTSP--GTDGE---RSAGESK-----ATVPRRIDVNKLPASCYYNEDAGTINVSSPNSALSSFHVDSGGAINAESSCYAMSVKRERDATDELEADRACSRVSDEEADQEGGTRKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQEL

SNPs (tot: 68)

Position	A %	C %	G %	T %	Probability
48		20	80		0.995493
49	20		80		0.995493
50		80		20	0.995493
52			80	20	0.995493
55	80		20		0.995493
58		80	20		0.995493
60	60	20		20	0.99255
61	20		80		0.995493
62	60	20			0.99255
63			20	80	0.995493
65	20	60		20	0.99255
66	80		20		0.995493
69	20		80		0.995493
72	16	50	33		1.0
78	33	66			1.0
79			83	16	0.994512
81		16		83	0.994512
93	83	16			0.994512
101			83	16	0.994512
108		16		83	0.994512
131	50			50	1.0
133	83	16			0.994512
205	15		84		0.999986
210	46		46	7	1.0
269	46		53		1.0
303	50		50		1.0
305	41	58			1.0
306		50		50	1.0
309			83	16	0.999991
320	63	36			1.0
326			81	18	0.999994
360	15		84		0.999986
403			20	70	0.999998
404	10		90		0.90298
407	80		20		0.999996
409		60	40		1.0
437	83		16		0.994512
442	16	83			0.994512
445		66		33	1.0
446		33	66		1.0
473	16	83			0.994512
488	16		83		0.994512
498	83		16		0.994512
525		66		33	0.997452
526		66	33		0.997452
529	66		33		0.997452
537		25	75		0.996473
543		25		75	0.996473
544			75	25	0.996473
545		75		25	0.996473
546	50	25	25		0.995533
548	75	25			0.996473
549			75	25	0.996473
550	75		25		0.996473
554	75	25			0.996473
555			75	25	0.996473
557	33		66		0.997452
569			33	66	0.997452
573	66		33		0.997452
583	66		33		0.997452
611		33	66		0.997452
616		66		33	0.997452
618	66			33	0.997452
628	33		66		0.997452
631	66		33		0.997452
636		33	66		0.997452
661		33		66	0.997452
691		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain