SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15491

Length: 1705 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15491

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15554	130/154
SustainPine v2.0	sp_v2.0_unigene16947	13/154
SustainPine v2.0	sp_v2.0_unigene77527	1/154

Source	Descriptions	Term	Type	Identity
AutoFact	Triosephosphate isomerase n=2 Tax=Picea sitchensis RepID=A9NUV2_PICSI	-	-	92%
FL-Next	sp=Triosephosphate isomerase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	triosephosphate isomerase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Triose-phosphate isomerase.	EC:5.3.1.1	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Glycolysis / Gluconeogenesis	00010	87%
Blast2go	Fructose and mannose metabolism	00051	87%
Blast2go	Inositol phosphate metabolism	00562	87%
Blast2go	Carbon fixation in photosynthetic organisms	00710	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	multicellular organism reproduction	GO:0032504	Biological Process	87%
Blast2go	primary root development	GO:0080022	Biological Process	87%
Blast2go	triglyceride mobilization	GO:0006642	Biological Process	87%
Blast2go	glycerol catabolic process	GO:0019563	Biological Process	87%
Blast2go	chloroplast organization	GO:0009658	Biological Process	87%
Blast2go	glyceraldehyde-3-phosphate biosynthetic process	GO:0046166	Biological Process	87%
Blast2go	triose-phosphate isomerase activity	GO:0004807	Molecular Function	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	87%
Blast2go	thylakoid	GO:0009579	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	0.0	-
Sma3	Triosephosphate isomerase	IPR000652	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM02

Fln msg:

Fln protein: MAAMAISSSSATVHIGCRKSVFVSNASSSVRSELAGLRRLDSVFNKGTRHCLFAQVQRNAQAVGNGCRGVVTMAGTGKFFVGGNWKCNGTKDSIAKLVTELNNAKLEDDVDIVVAPPFVYIDQVKSSLIDRIEISAQNSWVGKGGAFTGEISVEQLNDIGCKWVIHGHSERRHVIGEDNQFIGKKSAYAVMQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHVAVREWLSKNVSAKVASQTRIIYGGSVNGGNCVELAKQEDIDGFLVGGASLKGPEFATICNSVTAKKVAA*

Protein Length: 330

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCAATACCTATATTTATTTTCTAAGACTTCCTCACTTCTCCGTCAACACCAGCCAGGAGTAGTTAAGAGTGCCCCGCCTGAAAAGTCTTAACTTAAAACCCCTCCTGGTTTTCTAAGTTGCATTAAAACACTTCTGGGTTTTCTAATTTGCATCAAAACCCTAGTAGAAGTGGAAGGAAGCCAGTCGGTGACGATTTGAATA_-_ATGGCGGCCATGGCAATCAGCTCCAGCTCTGCGACAGTCCACATTGGTTGCAGGAAGTCTGTTTTCGTCTCCAACGCATCGTCGTCGGTTCGATCTGAGTTGGCTGGATTGCGGCGCCTGGATTCCGTGTTTAATAAGGGTACCAGACATTGCTTATTTGCCCAAGTTCAGAGGAATGCTCAAGCCGTTGGCAATGGCTGTCGTGGAGTTGTCACTATGGCGGGCACTGGGAAGTTCTTCGTTGGGGGCAACTGGAAATGTAATGGTACAAAGGATTCCATTGCAAAGCTTGTTACTGAATTGAACAATGCAAAACTTGAAGATGATGTTGATATTGTTGTAGCGCCTCCATTTGTTTATATTGACCAAGTGAAGAGCTCTTTAATTGATCGTATTGAAATTTCTGCCCAGAATTCATGGGTTGGAAAGGGTGGGGCTTTCACTGGAGAAATCAGTGTTGAACAACTAAACGATATTGGTTGTAAGTGGGTGATTCATGGGCATTCTGAGCGTAGACATGTCATTGGTGAGGATAATCAGTTTATTGGGAAAAAATCTGCATATGCAGTGATGCAGGGTCTGAAAGTGATTGCATGTATAGGGGAAAAGCTAGAAGAACGGGAAGCGGGGAAGACTTTTGATGTCTGTTATGAACAGCTAAAGGCATTTGCCGATAATGTTCCTAGCTGGGATGATGTGGTTATTGCATATGAACCTGTCTGGGCCATTGGTACAGGGAAAGTGGCTTCTCCTCAGCAGGCCCAGGAAGTTCATGTAGCAGTCCGTGAATGGTTGAGCAAGAATGTTTCTGCTAAAGTTGCATCTCAAACTCGAATTATTTATGGGGGTTCTGTAAATGGAGGAAATTGTGTGGAATTGGCGAAACAGGAGGATATTGACGGCTTCCTTGTTGGTGGTGCTTCTTTGAAGGGGCCAGAATTTGCCACTATTTGCAACTCTGTCACTGCAAAGAAGGTGGCTGCTTGA___GATCATTGTAGTTATTCTACTTTATTAACAGCTAGGCTTATTACAAAGAGACATAAAGAAAGTGGCAGAGGGAAGCTTGATATATTCTGTCAATATTACAGCAGACACAATGTTCTCGTTTCAGCATAGTTACTGTATTCTTAGCAGTTATAATAAATACAGGAGAGCTTTGTGAGCCATAGATATCTTTCCTTTCAGTTTTGACACAAACCAATTATTAAAGAGTTGAACAATCTTCACGACTTTCTTTTTCTTTTGGATATGCAAGATAATTTTTTTCCTTAATTCAATATGATAAGTTATTACAAGTTTCGTAAGCAAATTTTCCCACAAATGAGAATGTATATATATATATATATCTTTTTGTATTACAGACAGCTTTAAATTGCATCCGACACGGATAGTTGGACTCATTTTGTTAGTAACTGTCAGGCTCAAAATATGGGAATGGTGAATTAGCAATATCATGGAAAAGCGAGTGTAGTTAAAAC

Fln Alignment:

Contig15491___TVHIGCRKSVFVSNASSSVRSELAGLRRLDSVFNKGTRHCLFAQVQRNAQAVGNGCRGVVTMAGTGKFFVGGNWKCNGTKDSIAKLVTELNNAKLEDDVDIVVAPPFVYIDQVKSSLIDRIEISAQNSWVGKGGAFTGEISVEQLNDIGCKWVIHGHSERRHVIGEDNQFIGKKSAYAVMQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHVAVREWLSKNVSAKVASQTRIIYGGSVNGGNCVELAKQEDIDGFLVGGASLKGPEFATICNSVTAKKVAA
B8LM02________________TVRIGCKKSAFVTNASSSVRSEFAGLRRMDSMFDMGSSHCLFAQMQRNVQAVGNGCRGVVTMAGTGKFFVGGNWKCNGTKDSISKLVTELNSAKLEDDVDIVVAPPFVYIDQVKSSLTDRIEISAQNAWVGKGGAFTGEISVEQLKDIGCKWVIHGHSERRHVIGEDSQFIGKKSAYALTQGLKVIACIGEKLEEREAGKTFDVCYEQLKAFADNVPSWDDVVIAYEPVWAIGTGKVASPQQAQEVHVAVREWLSKNVSAEVASQTRIIYGGSVNGGNSAELAKQEDIDGFLVGGASLKGPEFASICNSVTAKKVAA

SNPs (tot: 72)

Position	A %	C %	G %	T %	Probability
75	75		25		0.996473
76	75			25	0.996473
78	75		25		0.996473
79		75		25	0.996473
80		75	25		0.996473
85	75			25	0.996473
86			75	25	0.996473
90		25		75	0.996473
91	75			25	0.996473
94		25		75	0.996473
96	75	25			0.996473
97			75	25	0.996473
98	75	25			0.996473
99	25		75		0.996473
138	25			75	1.0
146			20	80	0.999996
147	80			20	0.999996
148	80	20			0.999996
151			20	80	0.999996
152	20		80		0.999996
154	72	18	9		0.999994
157	72	9	18		0.999994
158	72		9	18	0.999994
159	72	9	18		0.999994
160	81			18	0.999994
168	9	18	72		0.999994
268	93			6	0.999264
270	90			3	0.997544
274		90	6	3	0.997544
277	93	6			0.999264
282		6		93	0.999264
287		6	93		0.999264
288			93	6	0.999264
289	93	6			0.999264
672		7		71	1.0
676	71		28		1.0
709	81	18			0.999994
727	70			20	0.999998
728		20		80	0.999996
729			20	80	0.999996
731	70		30		1.0
732		10		90	0.90298
733		22	77		0.999999
735			77	22	0.999999
736		77	22		0.999999
739		22		77	0.999999
742			77	22	0.999999
743	77		22		0.999999
749		22	77		0.999999
754		22	77		0.999999
755	22			77	0.999999
1059		85	14		1.0
1062	73	5		5	1.0
1063	78		5		1.0
1068		5	84		0.999846
1122	38	61			1.0
1123	5		94		0.997984
1124	2		41	56	1.0
1125	41	56	2		1.0
1127			2	56	1.0
1130		56		43	1.0
1131	43	56			1.0
1135	43		56		1.0
1137			15	56	1.0
1139		15	28	56	1.0
1140		84		15	1.0
1142		56		28	1.0
1145	56	43			1.0
1154		5	95		0.997749
1213		4	93	2	0.985381
1477		12		87	0.992554
1479		12		87	0.992554

SSRs (tot: 1)

Start position	End position	Sequence	Length
1557	1573	TA TA TA TA TA TA TA TA T	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain