SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15473

Length: 1023 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15473

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15697	8/143
SustainPine v2.0	sp_v2.0_unigene15869	6/143
SustainPine v2.0	sp_v2.0_unigene16893	84/143
SustainPine v2.0	sp_v2.0_unigene24735	8/143
SustainPine v2.0	sp_v2.0_unigene83809	3/143
SustainPine v2.0	sp_v2.0_unigene83818	27/143
SustainPine v2.0	sp_v2.0_unigene83844	1/143
SustainPine v2.0	sp_v2.0_unigene83846	1/143
SustainPine v2.0	sp_v2.0_unigene83849	1/143
SustainPine v2.0	sp_v2.0_unigene83858	1/143

Source	Descriptions	Term	Type	e value	Identity
AutoFact	flocculin [Trichomonas vaginalis G3] gb\|EAX95321.1\| flocculin, putative [Trichomonas vaginalis G3]	-	-	1.0e-13	27%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	27%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Flavodoxin, conserved site	IPR001226	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Cell surface receptor IPT/TIG	IPR002909	-	-
Sma3	Adhesive plaque protein	IPR002964	-	-
Sma3		IPR003267	-	-
Sma3		IPR003612	-	-
Sma3	Gibberellin regulated protein	IPR003854	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Root cap	IPR009646	-	-
Sma3		IPR010616	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Phospholipase A2, active site	IPR013090	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Atrophin-1	IPR017993	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P18616

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 21 aas, your sequence is shorter than subject: 340 - 1839

Fln protein: S*PWLSLNHTAAL*RRTASVDQRGIRRPPPHPTSVQIFPPTSPFVPL*IQLVVTLAVTQGT*HLFICNNGVRHPRRDEVLQVTCHFSAEHFLFIRKSDFCKLWPHGSQALCLHFSSSASNSPACDKASASHSPACDKASASISSSTCRTKTPTSWNFPGSSTTQISIPAGIHSSSDTSPNTQAPSTQDPHQASTSVHAPR*TSAGIHSPCNSSTRTQASNQASTSLHSPHQASTSPHSPHQASTSPHSPYQATTSLQAPHQDTTRAQTPTTWNFTSSSPSISQT*TPSSLQAPSTCHPSTSYQASSSLQAPSTCHPSTSYQASPSLQATSPSHPTTSNQA

Protein Length: 341

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATACAGCCGCACTCTGACGCCGCACCGCGTCGGTGGACCAGCGGGGAATCCGACGTCCACCGCCACATCCAACCTCTGTTCAAATTTTCCCACCAACCTCTCCCTTCGTCCCTCTATAAATTCAACTCGTCGTGACCTTGGCTGTCACTCAAGGGACGTAGCATCTCTTCATTTGCAACAATGGAGTTCGGCATCCCAGGAGGGATGAAGTTCTGCAAGTCACTTGTCATTTTTCTGCTGAGCATTTCTTGTTTATTCGCAAGTCAGACTTCTGCAAGTTATGGCCACACGGCTCCCAAGCCTTATGCTTACATTTCTCCTCCTCCGCCAGTAATTCCCCCGCCTGTGATAAAGCCTCCGCCAGTCATTCCCCCGCCTGTGACAAAGCCTCCGCCAGTATATCCTCCTCCACATGTCGTACCAAAACCCCCACCTCATGGAATTTCCCCGGTTCATCCACCACCCAAATCTCCATCCCCGCCGGTATACACTCCTCCAGTGATACATCCCCCAATACACAAGCCCCCAGTACACAAGACCCCCATCAAGCCTCCACCAGTGTACACGCCCCCCGTTAAACCTCCGCCGGTATACACTCCCCCTGTAATTCATCCACCAGAACACAAGCCTCCAATCAAGCCTCCACCAGCCTACATTCCCCCCATCAAGCCTCCACCAGTCCACATTCCCCCCATCAAGCCTCCACCAGTCCACATTCCCCCTATCAAGCCACCACCAGTCTACAAGCCCCCCATCAAGACACCACCAGGGCCCAAACACCCACCACATGGAATTTCACCAGTTCATCCCCCTCCATTAGTCAAACCTAAACCCCCTCCAGTTTACAAGCCCCCAGTACCTGTCATCCCTCCACCAGTTATCAAGCCTCCTCCAGTTTACAAGCCCCCAGTACCTGTCATCCCTCCACCAGTTACCAAGCCTCCCCCAGTTTACAAGCCACCAGTCCCAGTCATCCCACCACCAGTAATCAAGCCT

Fln Alignment:

Contig15473___SSASNSPACDKASASHSPACDKASASIS--SSTCRTKTPTSWNF-PGSSTTQISIPAGIHSSSDTSPNTQAPSTQDPHQASTS-VHAPR*TSAGIHSPCNSSTRTQASNQASTSLHSPHQASTSP---HSPHQASTSPHSPYQATTSLQAPHQDTTRAQTPTTWNFXXXXXXXXXXXXXXXLQAPSTCHPSTSYQASSSLQAPSTCHPSTSYQASPSLQATSPS
P18616________________SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP--TSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSP---TSPSYSPTS---------------------PSYSPSSPTYSPSSPYSSGASPDYSPSAGYSPTLPGYSPS

SNPs (tot: 63)

Position	A %	C %	G %	T %	Probability
157		15		84	0.999986
159	15		84		0.999986
167	15		84		0.999986
171			84	15	0.999986
175		84	15		0.999986
236	80	19			1.0
237		9	85	4	0.999726
241			9	90	0.999872
244	80	9			0.999537
245	85			14	1.0
297			4	95	0.999991
302		95		4	0.999991
303	95		4		0.999991
305		4	95		0.999991
306		4		95	0.999991
313		95	4		0.999991
314	95			4	0.999991
319	1	3	95		0.911382
320	3	96			0.986325
370		93	1	1	0.999352
377		2		97	0.972772
460		92		4	0.987114
462			4	95	0.997218
543	93			6	0.999453
545	93		6		0.999453
596	11	88			0.923564
598		88		11	0.923564
600	11	88			0.923564
631		10	90		0.90298
635		20		80	0.999996
636			20	80	0.999996
677		87		12	0.992554
679		12		87	0.992554
680	87			12	0.992554
682	87		12		0.992554
683		14		85	0.993533
694	75			25	1.0
695	75	25			1.0
724	88		11		0.999937
725	83			16	1.0
731		80	10	10	0.99967
732	80		10	10	0.99967
733		90	10		0.999898
734		90	10		0.999898
735	80			20	1.0
737	10			90	0.999898
739		90		10	0.999898
740	80			20	1.0
741		90	10		0.999898
742	90	10			0.999898
747	5	85		10	0.999793
749	10	90			0.999898
908		18		81	1.0
918		14		85	0.999981
934	10	90			0.90298
940	85	14			0.993533
943	14			85	0.993533
949		85		14	0.993533
962	87		12		0.992554
963		87		12	0.992554
973	25	75			0.996473
988	75	25			0.996473
1007	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain