SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15445

Length: 1334 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15445

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18213	68/74
SustainPine v2.0	sp_v2.0_unigene26231	3/74

Source	Descriptions	Term	Type	Identity
AutoFact	mitochrondrial voltage-dependent anion-selective channel [Phaseolus coccineus]	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NRG5

Fln msg:

Fln protein: MGKGPGLFSDIGKKAKDLLTKDYNYDQKFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNAIVDVKIDTNSNILTTITLDQPIPHAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGHDEISVDGEMAFDTASEYTAAVILADKGDTVKASYTHIVNPISKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLGALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP*

Protein Length: 263

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGCTTTGAGTTGCCACTTGACCCTAAATAAATGTATGTATGATATGGTATGTATGGTATCCTGTACTCGATTCTGTCGAGCGAAGGTTACCCTCCCGTGAGGCGAAGTCTGCAGTTGCCAGTGCGTTTTCCTTCATCCTTGGAGCATCCTCGGAAGAAGGATATCTAACAGTCTTTAGTAGAG_-_ATGGGCAAGGGACCTGGACTCTTTTCAGACATTGGAAAGAAGGCTAAGGATCTTCTCACAAAGGACTACAATTATGATCAAAAATTTACTGTCACCACATTCAGCGAGACTGGACTGGCATTTACATCGACTGGTGTAAAGAAAGGGGAACTGTTTTCTGGAGATCTCAACACACAGTACAAATATCAAAATGCAATCGTGGATGTGAAAATTGATACAAATTCTAACATCTTAACAACAATCACTCTTGATCAACCCATTCCACATGCAAAGACTATTTTCAGCTTCAAAATACCAGATCAGAAGTCCGGCAAGGTGGACTTGCAGTACTTTCATGATCATGTGGGATTAAGCTCAAGCATTGGTTTGACACCTACTCCCATTGTTGAGGTCTCTGGTGCACTTGGTCATGATGAAATTTCAGTTGATGGTGAGATGGCCTTTGACACTGCATCAGAGTACACTGCAGCTGTGATACTGGCTGATAAGGGGGACACTGTGAAGGCCTCATATACACATATAGTGAATCCTATTTCAAAGACTGCAGTTGCGGCTGAATTCACCCACAAGTTTTCGACAAATGAGAACACTTACACAGTTGGGAGTTCACATGCTATTGATCGTCTTACCACAATGAAATCACGACTTGACAATCGTGGGAAACTTGGTGCTCTTATCCAACACGAGTGGAGGCCTAAATCACTAGTAACAATTTCTGGAGAATTTGACACCAAGGCTCTTGATAAGAGTGCCAAAATTGGTTTGTCATTGGCATTAAAGCCTTGA___GATAATCTAGTCAGAAATTTAAGTTTAGCCTGTTTTGATTCTTCTTGGATGTGATCTAATATTTTTTTTGAAGTAATCTGGAGGCAGAATGCAGGCATTGACTATTTCTCAAATTCTGAAGAGATTTAAACCTGCTGCCATGCATTCTGTAACTGGGCAACTAGTCGGTTGAATAATTTATTCATGGAAGCTTGTGGCAATAATAGTGTTTCTCTTCAACTGTTATTTTTGATCTCCCATGGAAACCGTTAGCATGAGTAATATTCCCTATTGTTTGTTAATTTTCCCTGCCCTCAAGCAACATGTTGAGATCTTTTATATGGTATCATTTTTAAAA

Fln Alignment:

Contig15445___MGKGPGLFSDIGKKAKDLLTKDYNYDQKFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNAIVDVKIDTNSNILTTITLDQPIPHAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGHDEISVDGEMAFDTAS---------------EYTAAVILADKGDTVKASYTHIVNPISKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLGALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP
A9NRG5________________MGKGPGLFSEIGKKAKDLLTRDYNYDQKFTVTTFSETGLAFTSTGVKKGELFSGDLNTQYKYQNATVDVKIDTNSNILTTITLDQPIPNAKTIFSFKIPDQKSGKVDLQYFHDHVGLSSSIGLTPTPIVEVSGALGSDGISVGGEMAFDTASSTFSKYSAGIGVSKPEYTAAVILADKGDTVKASYTHIVNPITKTAVAAEFTHKFSTNENTYTVGSSHAIDRLTTMKSRLDNRGKLAALIQHEWRPKSLVTISGEFDTKALDKSAKIGLSLALKP

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
94		93	6		0.999364
310		62	37		1.0
313		62		37	1.0
744	77			11	0.968132
745	66	22			0.999999
746	11			88	0.923564
748	11	77		11	0.968132
749	11	11		77	0.968132
750	88	11			0.923564
752		12		87	0.992554
753	12			87	0.992554
769		87		12	0.992554
787	72	27			1.0
790		27		72	1.0
791			27	72	1.0
797	72	27			1.0
798	72			27	1.0
799	72			27	1.0
800			27	72	1.0
802	72	27			1.0
803			72	27	1.0
804	72		27		1.0
805	72			27	1.0
820		5	77	16	1.0
822	83	11		5	0.999887
823		16		11	1.0
824		22	77		1.0
825		5	5	77	0.999842
827		77	22		1.0
828	83		16		1.0
830	66	16	5		1.0
831	11			88	0.999937
837		11		88	0.999937
838	11	5	83		0.999887
862		90		9	0.999842
864	86		9	4	0.999642
866			4	86	0.999642
869	90			9	0.999842
872	86	13			1.0
876	9			86	0.999642

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain