SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15444

Length: 1328 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15444

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18083	75/80
SustainPine v2.0	sp_v2.0_unigene22623	1/80

Source	Descriptions	Term	Type	Identity
AutoFact	Ran-binding protein [Triticum aestivum]	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	87%
Blast2go	ran-binding protein 1	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Pleckstrin homology-like domain	IPR011993	-	0.0	-
Sma3	Ran binding domain	IPR000156	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU32

Fln msg:

Fln protein: MAGTQEDPVLTRAVDDDSRENEDDAGKEEDTGAQVAPIVKLEEVAVTTGEEEEDVLLDMKAKLYRFDKDGNQWKERGVGTVKFLKHKDTTKVRLVMRQSKTLKICANHLIHSPMSLQEHAGSDKTWVWHATDFSDGELKEELFCIRLGSVENAKKFRDLFEEIAGSEGKNTEESEEAAESAAELIKSLKVGDKKEESTEVSKVEEKEGDKTEVKEEKPTGSISTEAKTEA*

Protein Length: 232

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGGACAGATGTTTTCTCTCCATCGACCTCTTTGCCCTTTGCCTTCGAAGGCGTTTATGCACAGTTAAATCCTTTGTCCAAAATCCTTGGGGTTTCGCATTCGTGTCTGATATTGGGCGAGTTCCTGGCATATTTTGGATCCATCGAATTCATTCGAGCCCTCCCTCTGTGCACTATCTGGTATTGGG_-_ATGGCTGGAACTCAGGAGGATCCTGTTCTTACACGGGCAGTAGATGACGATTCGAGAGAGAACGAGGATGATGCCGGAAAGGAAGAGGACACTGGTGCTCAGGTTGCACCCATTGTTAAGCTTGAGGAGGTTGCAGTAACGACGGGAGAAGAAGAGGAGGATGTCCTTCTTGACATGAAGGCCAAGCTGTACAGGTTTGACAAGGATGGGAATCAATGGAAGGAGCGTGGTGTAGGAACAGTAAAGTTTCTTAAGCACAAGGATACTACAAAGGTTCGGTTGGTCATGAGGCAATCCAAGACATTGAAAATATGTGCAAACCATTTAATTCATTCCCCAATGTCACTTCAGGAGCACGCAGGTAGTGATAAAACTTGGGTTTGGCATGCAACTGATTTCTCAGATGGGGAACTGAAGGAAGAACTCTTCTGCATTCGTCTTGGCTCTGTAGAGAATGCTAAGAAGTTTAGAGATCTTTTCGAAGAAATTGCTGGGTCTGAAGGTAAGAATACAGAAGAGAGTGAGGAAGCTGCAGAATCAGCTGCTGAACTTATCAAAAGTTTAAAGGTTGGTGATAAGAAAGAGGAATCAACGGAAGTTAGCAAAGTCGAGGAAAAGGAAGGCGACAAGACAGAAGTCAAGGAAGAGAAGCCTACAGGGTCAATTTCAACTGAAGCTAAAACGGAAGCTTGA___TTGTGATTCTACAGATATTTTTCCAATAAGAATGTGCTGTTGTAGATGCATCCGTGTATGACCTATAGTCTGGAAACTATAGTGTGGCTTATGTAGCTTTGTTAGGGCATTTCCTGAGTTTATTGTTTGTTTGCCCTTGTGTATTTGGCACACGAATTGGATATGTTTTGTTAGATAGTCATTGTTTGAGTCAGGTGTCAGGGGTTTTGGTAAGTCCAATTATTTGTTGTTTCAGTATCACTATCCAGAACTTCTTGATTATTCCTTAACAGGCAGTTGTTCGGTTACTACATTTTTTGCAAAAAAATTTGGCCATGTCAGAATGGTGTGTTTCCAATGACATTGGTATGCATGTGATCTAGATATCTACACTAAGATATTTACTGTAAATGTGAGCATTCTGTTTACTTCTTGTCCCCTTCGC

Fln Alignment:

Contig15444___MAGTQEDPVLTRAVDDDSRENEDDAGKEEDTGAQVAPIVKLXXXXXXXXXXXXDVLLDMKAKLYRFDKDGNQWKERGVGTVKFLKHKDTTKVRLVMRQSKTLKICANHLIHSPMSLQEHAGSDKTWVWHATDFSDGELKEELFCIRLGSVENAKKFRDLFEEIAGSEGKNTXXXXXXXXXXXXLIKSLKVGDXXXXXXXXXXXXXXXGDKTEVKEEKPTGSISTEAKTEA
A9NU32________________MAGAQEDPVLTRAVDDDSRENEDDAGKEEDTGAQIAPIVKLEEIAVTTGEEEEDVLLDMKSKLYRFDKDGNQWKERGVGTVKLLKHKETTKVRLVMRQSKTLKICANHLIIPPMSLQEHAGSDKSWVWHATDFSDGELKEELFCIRLGSVENAKKFRDLFEEIAESEVKNTEESEEAAESAAELIKSLKVGD-KKKELKEESKEEKEDEKPEVQEEKPTGQISTEAEKEA

SNPs (tot: 123)

Position	A %	C %	G %	T %	Probability
215		33		66	0.997452
217			66	33	0.997452
219			33	66	0.997452
220			66	33	0.997452
223	66	33			0.997452
227	66			33	0.997452
230	66	33			0.997452
231			66	33	0.997452
238	10		90		0.90298
240	10			90	0.90298
242		10		90	0.90298
244	90			10	0.90298
245		90	10		0.90298
246	90		10		0.90298
248			90	10	0.90298
250			90	10	0.90298
253		10	90		0.90298
307		16	83		0.999991
312		14		85	0.999981
313		78	7	14	0.999974
314	85			14	0.999981
317		14		85	0.999981
323		84		15	0.999986
448		10	90		0.90298
450	90	10			0.90298
560			14	85	0.993533
563	85		14		0.993533
564			85	14	0.993533
567		14	85		0.993533
569	85			14	0.993533
570		85	14		0.993533
573	85			14	0.993533
575			85	14	0.993533
576		14		85	0.993533
578		20	80		0.995493
580		20	80		0.995493
584	66	33			1.0
585	66		33		1.0
586	66			33	1.0
588			33	66	1.0
591	33		66		1.0
592		33	66		1.0
593		33		50	1.0
602		66		33	1.0
603	66	33			1.0
607		33	66		1.0
653			14	85	0.993533
656	14		85		0.993533
660		11		88	0.923564
663	66	11	11		0.944822
665	66	11		11	0.944822
666			87	12	0.992554
667	75		12		0.975346
668	62	25		12	1.0
669		12		87	0.992554
670	12		75	12	0.975346
671		75	12		0.975346
672			12	87	0.992554
673	62	37			1.0
674	87			12	0.992554
676	75	12		12	0.975346
677	87			12	0.992554
678		12	75		0.975346
679	11	22		66	0.999999
680			11	88	0.923564
681		11		88	0.923564
682	88	11			0.923564
684	88			11	0.923564
690		11		88	0.923564
693		88	11		0.923564
695	88	11			0.923564
696	88			11	0.923564
698	88			11	0.923564
699	88	11			0.923564
701		11		88	0.923564
705	11			88	0.923564
766	90		10		0.90298
770	88			11	0.923564
771	88	11			0.923564
781		10	90		0.90298
782			10	90	0.90298
784		10	90		0.90298
789		10		90	0.90298
790	90			10	0.90298
791	90			10	0.90298
793	90		10		0.90298
794	90	10			0.90298
795	90			10	0.90298
798			90	10	0.90298
799		10	90		0.90298
801	90	10			0.90298
893	75	8		16	0.99999
894	75	8	16		0.99999
895	75		16	8	0.99999
897			83	16	0.999991
899	75	8		16	0.99999
900	75	16		8	0.99999
901	16		83		0.999991
904		16		83	0.999991
905	16	8	75		0.99999
985	93		6		0.999453
988		6	93		0.999264
989		6		93	0.999264
990			93	6	0.999264
997	90	6			0.997544
998	6			93	0.999264
999		6	93		0.999264
1001	90	9			1.0
1002	6		90	3	0.997544
1006	2	5		92	0.990091
1009		7		92	1.0
1010	94		5		0.997984
1011			94	5	0.997984
1013	5		94		0.9982
1015	94	5			0.9982
1018			5	94	0.9982
1019		94	5		0.9982
1021		45		54	1.0
1023	94			5	0.998744
1024		5	94		0.998744
1025	6			93	0.99903
1026		6		93	0.99903
1243	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain