SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15261

Length: 577 nt

UniGene Fasta

>uagpf_v2_unigene15261
ATTATAGCTGGCATACTAAGGAGCAACCCGCCACCGCGCCCCCGTGCAGGGCGGAAGACGTTTCCTTTGGCTCTTATTCTGTCACCAACGAGAGAATTGTCTTGCCAGATACATGAAGAGGCTAGAAAGTTTGCATATCAAACTGGCATCAAGGTAGTGGTTGCTTATGGAGGGGCGCCTATTACTGCACAGCTTCGGGAGTTGGAGAGGGGTGTTGATATTCTTGTTGCAACTCCGGGACGGCTTGCGGATCTTCTTGAGAGGGGTAGGGTTTCCCTTTCAATGGTGAAATATTTGGCCCTGGATGAGGCAGATCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAAATAGTGGAACAGATGGACATGCCAACAGCTGGGGAAAGGCAAACATTGCTGTTCAGTGCTACTTTTCCAAAAGAAATACAGAGGTTGGCTTCGGATTTTCTCTACAATTACATTTTTCTAGCTGTTGGTAGAGTGGGATCCAGTACAGATCTTATTATTCAGAGAGTTGAATATGTCCAAGAGCCGGAGAAAAGAAGCCATCTAATGGATCTCATCCATGCTC

Ace file of the UniGene uagpf_v2_unigene15261

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1917	9/11

Source	Descriptions	Term	Type	Identity
AutoFact	DEAD-box ATP-dependent RNA helicase 52B n=3 Tax=Oryza sativa RepID=RH52B_ORYSJ	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	protein	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	82%
Blast2go	ATP binding	GO:0005524	Molecular Function	82%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	82%
Blast2go	plastid	GO:0009536	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	ADC synthase	IPR005801	-	-
Sma3	Protein-tyrosine phosphatase-like, PTPLA	IPR007482	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	GUCT	IPR012562	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQ26

Fln msg: Distance to subject end: 182 aas, your sequence is shorter than subject: 192 - 593

Fln protein: IIAGILRSNPPPRPRAGRKTFPLALILSPTRELSCQIHEEARKFAYQTGIKVVVAYGGAPITAQLRELERGVDILVATPGRLADLLERGRVSLSMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPTAGERQTLLFSATFPKEIQRLASDFLYNYIFLAVGRVGSSTDLIIQRVEYVQEPEKRSHLMDLIHA

Protein Length: 193

Fln nts: ATTATAGCTGGCATACTAAGGAGCAACCCGCCACCGCGCCCCCGTGCAGGGCGGAAGACGTTTCCTTTGGCTCTTATTCTGTCACCAACGAGAGAATTGTCTTGCCAGATACATGAAGAGGCTAGAAAGTTTGCATATCAAACTGGCATCAAGGTAGTGGTTGCTTATGGAGGGGCGCCTATTACTGCACAGCTTCGGGAGTTGGAGAGGGGTGTTGATATTCTTGTTGCAACTCCGGGACGGCTTGCGGATCTTCTTGAGAGGGGTAGGGTTTCCCTTTCAATGGTGAAATATTTGGCCCTGGATGAGGCAGATCGAATGCTTGACATGGGTTTTGAGCCTCAAATTCGTAAAATAGTGGAACAGATGGACATGCCAACAGCTGGGGAAAGGCAAACATTGCTGTTCAGTGCTACTTTTCCAAAAGAAATACAGAGGTTGGCTTCGGATTTTCTCTACAATTACATTTTTCTAGCTGTTGGTAGAGTGGGATCCAGTACAGATCTTATTATTCAGAGAGTTGAATATGTCCAAGAGCCGGAGAAAAGAAGCCATCTAATGGATCTCATCCATGCTC

Fln Alignment:

Contig15261___RPRAGRKTFPLALILSPTRELSCQIHEEARKFAYQTGIKVVVAYGGAPITAQLRELERGVDILVATPGRLADLLERGRVSLSMVKYLALDEADRMLDMGFEPQIRKIVEQMDMPTAGERQTLLFSATFPKEIQRLASDFLYNYIFLAVGRVG-SSTDLIIQRVEYVQEPEKRSHLMDLI
C0PQ26________________QPHLAHGDGPIVLVLAPTRELAVQIQQESVKFGTSSKIKSTCIYGGAPKGPQIRDLQRGVEIVIATPGRLIDMLEARHTNLRRVTYLVLDEADRMLDMGFEPQIRKIITQI----RPDRQTLYWSATWPREVENLARQFLHNPYKVIIGSADLKANHAISQIVEVVSEYEKYPRLIKLL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
144		25		75	0.996473
146			75	25	0.996473
148	75		25		0.996473
150		75	25		0.996473
152	75	25			0.996473
153		25	75		0.996473
154			75	25	0.996473
156	75		25		0.996473
158		25		75	0.996473
159			66	33	0.997452
162		33		66	0.997452
163	33		66		0.997452
166		33		66	0.997452
171	66			33	0.997452
261		16	83		0.994512
263		16	83		0.994512
264	20	20			0.99255
265			20	20	0.99255
266			83	16	0.994512
269		16		83	0.994512
270	83			16	0.994512
272			83	16	0.994512
273		16	83		0.994512
274	14			85	0.993533
275		14		85	0.993533
279	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain