SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15149

Length: 799 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15149

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10183	21/25
SustainPine v2.0	sp_v2.0_unigene34541	2/25

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide-sugar transporter family protein [Arabidopsis thaliana] ref\|NP_001031992.1\| Nucleotide-sugar transporter family protein [Arabidopsis thaliana] gb\|AAM60900.1\| CMP-sialic acid transporter-like protein [Arabidopsis thaliana] gb\|AAO42302.1\| putativ	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	nucleotide-sugar transporter family protein	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	84%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	84%
Blast2go	CMP-N-acetylneuraminate transmembrane transporter activity	GO:0005456	Molecular Function	84%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	84%
Blast2go	integral to membrane	GO:0016021	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-sugar transporter	IPR007271	-	0.0	-
Sma3	UDP-galactose transporter	IPR004689	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
81		25	75		0.996473
84		25		75	0.996473
90	75	25			0.996473
91	75	25			0.996473
93	75			25	0.996473
94			25	75	0.996473
98		25	75		0.996473
112			75	25	0.996473
124	80		20		0.995493
128	80		20		0.995493
131	20		80		0.995493
133	80	20			0.995493
134	80			20	0.995493
137		80	20		0.995493
138		20		80	0.995493
140		80	20		0.995493
145	71		14	14	0.984337
146	71	14		14	0.984337
147	14	14		71	0.984337
150		14		85	0.993533
151	85	14			0.993533
155			14	85	0.993533
157			85	14	0.993533
161		14		85	0.993533
166	12		12	75	0.975346
167	87			12	0.992554
168		12		87	0.992554
169			12	87	0.992554
175			12	87	0.992554
176		87	12		0.992554
178	87	12			0.992554
179			87	12	0.992554
181		87		12	0.992554
187			10	90	0.90298
197			18	81	0.999994
203	18		81		0.999994
204		18	81		0.999994
313	30		70		1.0
362		10	90		0.90298
364		10	90		0.90298
508		44		55	1.0
567		25		75	0.996473
568	25		75		0.996473
569	75	25			0.996473
572	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain