SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15139

Length: 766 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15139

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27100	27/33

Source	Descriptions	Term	Type	Identity
AutoFact	NAC domain-containing protein 78 [Arabidopsis thaliana] sp\|Q84K00.2\|NAC78_ARATH RecName: Full=NAC domain-containing protein 78; Short=ANAC078 emb\|CAB85547.1\| putative protein [Arabidopsis thaliana] gb\|AAM20460.1\| putative protein [Arabidopsis thaliana] gb	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	38%
Blast2go	nac domain ipr003441	-	-	58%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	58%
Blast2go	response to salt stress	GO:0009651	Biological Process	58%
Blast2go	leaf senescence	GO:0010150	Biological Process	58%
Blast2go	regulation of flavonoid biosynthetic process	GO:0009962	Biological Process	58%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	58%
Blast2go	response to high light intensity	GO:0009644	Biological Process	58%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	58%
Blast2go	protein heterodimerization activity	GO:0046982	Molecular Function	58%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	58%
Blast2go	cytoplasm	GO:0005737	Cellular Component	58%
Blast2go	nucleus	GO:0005634	Cellular Component	58%

Source	InterPros	Term	Type	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	Peptidase M20	IPR002933	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Alcohol dehydrogenase, iron-type, conserved site	IPR018211	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
62		33	33	33	0.997753
63		66	33		0.997452
65	33	33	33		0.997753
66	33		33	33	0.997753
67		33		66	0.997452
68	66		33		0.997452
69	66	33			0.997452
70		33		66	0.997452
72	33			33	0.997753
76	66	33			0.997452
77	66			33	0.997452
78		66	33		0.997452
79	66			33	0.997452
82	66	33			0.997452
83	66			33	0.997452
84	66	33			0.997452
351	87	12			0.992554
352			12	87	0.992554
354	87		12		0.992554
356	87	12			0.992554
357		12		87	0.992554
364			87	12	0.992554
365		12	87		0.992554
366	12			87	0.992554
367		12	87		0.992554
595	14		85		0.993533
596		85	14		0.993533
598	85	14			0.993533
666	33		66		1.0
669		80	20		0.995493
671	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain