SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene15120

Length: 1933 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene15120

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15709	40/128
SustainPine v2.0	sp_v2.0_unigene16194	75/128
SustainPine v2.0	sp_v2.0_unigene23347	3/128
SustainPine v2.0	sp_v2.0_unigene78694	1/128
SustainPine v2.0	sp_v2.0_unigene80330	1/128

Source	Descriptions	Term	Type	Identity
AutoFact	Cystathionine gamma-synthase, putative n=1 Tax=Ricinus communis RepID=B9RYU1_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	o-succinylhomoserine sulfhydrylase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methionine gamma-lyase.	EC:4.4.1.11	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	85%
Blast2go	Selenocompound metabolism	00450		0.0	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	methionine gamma-lyase activity	GO:0018826	Molecular Function	0.0	85%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	85%

Source	InterPros	Term	Type	Identity
Sma3	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	IPR000277	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2J0

Fln msg:

Fln protein: MEGTILPCRRSHEDDGAEFSKKHKAMKKWVDPAQGLANARHEFGEHGGVNMSIEASATFTVMEPETMRRMFSEELGPERDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLLQLCSHGDHVVASRCLYGGTHALLAHFLPRACGVSTSFVDIQRLDDVKNAITPSTKVLYFESVSNPTLAVADIPSLSAIAHEKNVKVVVDNTFSPMIISPAKLGADVVIHSISKYISGGADVIAGAICGPADLINSMMDLHQGTLMLLGPTMNAKVAFEISERLPHLGLRMKEHCHRAYTYASRMKKLGMKVIYPGLEDHPQYALLKTIVNSGYGYGGILCVDMETEERANKLMNHLQNHTQFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKDLAGISPGLIRMSIGYSGTLEQRWSQFEDALSRMSQVLPF*

Protein Length: 437

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCTCAAGTTGTTCATGGTTTTTTTGGTTTGGGGTTCTGAATTCATAGAAGCTTAAGGTCTCTGTAAGACTGTGAATCCATTCTCAGTTAAAAGTTCAGCCGTCGTGACCTTGGCTGTCACTCAATTTTGCGTATCTGAAGGACTGAATCCATAGTGTTGATTTATAGCA_-_ATGGAGGGAACAATACTGCCATGCAGACGATCCCATGAGGATGATGGGGCCGAATTCTCCAAGAAACACAAAGCTATGAAGAAATGGGTTGATCCAGCCCAAGGCCTGGCTAATGCCCGCCATGAGTTTGGCGAGCATGGAGGTGTGAACATGTCCATAGAAGCCTCGGCTACCTTTACAGTTATGGAGCCTGAGACCATGAGAAGGATGTTCAGTGAGGAGCTTGGCCCAGAACGCGATTTCTTCATATACAGCAGGCATTTCAATCCTACTGTTCTCAATTTGGGCAGGCAGATGGCTGCTTTGGAGGGGACTGAAGCTGCCTACTGTACTTCCAGTGGTATGTCTGCAATATCTTCTGTTTTATTACAGTTGTGTAGCCATGGAGACCATGTTGTGGCCTCTAGGTGTCTGTATGGAGGCACCCATGCATTGTTGGCACATTTTCTGCCAAGGGCCTGTGGGGTTTCAACATCTTTTGTTGATATCCAGAGGCTTGATGATGTGAAAAATGCCATAACACCGTCTACCAAGGTTTTGTATTTTGAATCTGTCTCAAATCCAACTCTGGCAGTTGCAGACATCCCATCTCTGTCTGCCATTGCTCACGAGAAAAATGTCAAGGTGGTGGTTGATAATACCTTTTCTCCCATGATCATATCCCCTGCAAAGCTTGGTGCTGATGTTGTTATTCACAGCATTTCAAAATATATCAGTGGAGGTGCTGATGTTATAGCAGGAGCAATATGTGGGCCTGCAGATCTGATCAATTCCATGATGGATCTCCATCAGGGAACCTTGATGCTCTTGGGGCCAACCATGAATGCAAAAGTGGCATTTGAGATCTCTGAGAGGCTCCCCCACTTGGGATTGAGGATGAAGGAGCACTGTCACAGAGCATATACCTATGCAAGCAGGATGAAGAAATTGGGAATGAAAGTTATATATCCTGGCCTAGAAGATCACCCTCAGTATGCCCTTTTGAAGACCATTGTTAACAGTGGGTATGGTTATGGTGGGATTCTGTGTGTGGACATGGAGACTGAGGAGAGGGCCAACAAGCTCATGAACCACCTGCAGAATCATACCCAGTTTGGGCTGATGGCGGTGAGCTTGGGTTACTATGAAACGTTGATGTCATGCTCTGGCAGCAGCACTAGCAGTGAGATGAATGAGGAGGAAAAGGATTTGGCTGGGATCTCGCCAGGTCTGATAAGGATGTCGATTGGTTACAGTGGGACTCTTGAGCAGAGATGGAGCCAATTTGAGGATGCCCTCTCCAGGATGTCTCAAGTCCTGCCTTTTTAA___ACGCTGGGATTGATGCAGATCCAACACTTCGTTTTCTATTTATTATCATAGCTAGTCTGTAAGAGGTGTACTGTAACACTTCTATGTTTTTTATATGCATATATGTATTTCTTCCCCTGATCTGCTATGCTGGAACTACAGATTGCATGCAACTGTTGAAAAATGGTGTGATAATTGCAAGACATAATTTGTCTATTTGAAAGACGGTGTGATAATTGCACGACCTAATTTGGCTTTTTAAAAATCTCTGTACAAATCTGATCAGTCAGAGTGGGCACAAATATGCTATCTCAGAGAGAAGGTACAGAGGAAAATGTGCTGTGGATGGAAATATAAGTAATAGCTGGCATTGTATCATGATATATTTGATCCCAACGATCCCAATTTTAAAAAGTCAATGCTGAAGCATATTATATGTGCTGATATGAAG

Fln Alignment:

Contig15120___MEGTILPCRRSHEDDGAEFSKKHKAMKKWVDPAQGLANARHEFGEHGGVNMSIEASATFTVMEPETMRRMFSEELGPERDFFIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLLQLCSHGDHVVASRCLYGGTHALLAHFLPRACGVSTSFVDIQRLDDVKNAITPSTKVLYFESVSNPTLAVADIPSLSAIAHEKNVKVVVDNTFSPMIISPAKLGADVVIHSISKYISGGADVIAGAICGPADLINSMMDLHQGTLMLLGPTMNAKVAFEISERLPHLGLRMKEHCHRAYTYASRMKKLGMKVIYPGLEDHPQYALLKTIVNSGYGYGGILCVDMETEERANKLMNHLQNHTQFGLMAVSLGYYXXXXXXXXXXXXXXXXXXXKDLAGISPGLIRMSIGYSGTLEQRWSQFEDALSRMSQVLP
A9P2J0________________MEGSVLPCKRPYEEAYGEFCKKNKVMKKWVDPVQGLANARHEFGEHGGVNMSIEASATFTVMEPETMKKMFSGELGPERDFYIYSRHFNPTVLNLGRQMAALEGTEAAYCTSSGMSAISSVLSQLCNHGDHVVASRCLYGGTHALLAHFLPRACGVSTTFVDIHRLEDVRNAITPSTKVLYFESMSNPTLAVADIPSLSAIAHEKNVKVVVDNTFAPVILSPAKLGADVVIHSISKYISGGADVIAGAICGSANLINSMMDLHQGALMLLGPTMNPKVAFEISERLPHLGLRMKEHCHRSYTYASRMKKMGLKVIYPGLEDHPQYALLKSMVNSGYGYGGMLCVDMESEERANMLMSHLQNYTQFGLMAVSLGYYETLMSCSGSSTSSEMNEEEKELAGISPGLIRMSIGYSGTLEQRWSQFENALTSMTEVLP

SNPs (tot: 144)

Position	A %	C %	G %	T %	Probability
126		66		33	0.997452
129		66		33	0.997452
130	33		66		0.997452
134		66	33		0.997452
138		33	66		0.997452
139	33		66		0.997452
147	33	66			0.997452
148			33	66	0.997452
149		66	33		0.997452
150	66		33		0.997452
481		20	80		0.995493
483			80	20	0.995493
485	80		20		0.995493
486			80	20	0.995493
488	20	80			0.995493
489	80	20			0.995493
490		20	80		0.995493
491	80			20	0.995493
499	20			80	0.995493
500		20		80	0.995493
503		20	80		0.995493
605		20		80	0.995493
613		20		80	0.995493
614		20	80		0.995493
615			80	20	0.995493
616	80			20	0.995493
620	80			20	0.995493
621		80	20		0.995493
622		80		20	0.995493
626		20	80		0.995493
627	20	80			0.995493
648		60	40		1.0
649	60			40	1.0
650	60	40			1.0
653	40		60		1.0
662		40	60		1.0
664			33	66	1.0
673	33			66	1.0
823		13	86		0.999973
826		13	86		0.999973
832		14		85	0.999981
833	84	15			0.999986
834	84			15	0.999986
836	84		15		0.999986
837		84	15		0.999986
841			15	84	0.999986
844	15			84	0.999986
846		84		15	0.999986
872		14	85		0.999981
886		14		85	0.999981
1005		12		87	0.992554
1011		87		12	0.992554
1012	87			12	0.992554
1013	87	12			0.992554
1014		87	12		0.992554
1033	87	12			0.992554
1034			12	87	0.992554
1036		12		87	0.992554
1038	87			12	0.992554
1041		14		85	0.993533
1049	85	14			0.993533
1050			85	14	0.993533
1056		85		14	0.993533
1058	14	85			0.993533
1068		12		87	0.992554
1070	87			12	0.992554
1071		12	87		0.992554
1074		10		90	0.90298
1076	90			10	0.90298
1077	80	20			0.999996
1078		10	90		0.90298
1079			90	10	0.90298
1080	90			10	0.90298
1084		90		10	0.90298
1087			10	90	0.90298
1089	90			10	0.90298
1094		10	90		0.90298
1095	90			10	0.90298
1096		10	90		0.90298
1097	10	90			0.90298
1169	75	25			1.0
1173	75		25		1.0
1176	25	75			1.0
1183		25		75	1.0
1187	75	25			1.0
1189		25	75		1.0
1190	75			25	1.0
1192	28	71			1.0
1268	85		14		0.993533
1272	85	14			0.993533
1274		87		12	0.992554
1275	75		12	12	0.975346
1276		87	12		0.992554
1277		87	12		0.992554
1281	87	12			0.992554
1282		12	87		0.992554
1283	87		12		0.992554
1284	87	12			0.992554
1286		87	12		0.992554
1287	87			12	0.992554
1288		12		87	0.992554
1292	12	87			0.992554
1293	88	11			0.923564
1296			11	88	0.923564
1299	11		88		0.923564
1300		11	88		0.923564
1304	88	11			0.923564
1307			88	11	0.923564
1309	11		88		0.923564
1310		11	88		0.923564
1312		11	88		0.923564
1325			10	90	0.90298
1326	90			10	0.90298
1327		10		90	0.90298
1329	90			10	0.90298
1330	90		10		0.90298
1333		10	90		0.90298
1337	90	10			0.90298
1350	16		83		0.999991
1352	83	16			0.999991
1353			83	16	0.999991
1354		83		16	0.999991
1355	83		16		0.999991
1358	83			16	0.999991
1359		83	16		0.999991
1361	76	23			1.0
1362	15		84		0.999986
1364	76	7		15	0.999983
1365		15	84		0.999986
1366	15			84	0.999986
1436	86	13			0.999973
1488		22		77	1.0
1493		77	22		1.0
1495	77	22			1.0
1496		5	77	16	1.0
1498		77	22		1.0
1505	18			81	1.0
1584		3		96	0.98536
1585	85	11	3		1.0
1586	90		1	8	1.0
1588	90			9	1.0
1589	3	96			0.98536
1894	60			40	1.0
1899	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain