SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14980

Length: 791 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14980

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5945	22/22

Source	Descriptions	Term	Type	Identity
AutoFact	SGF29 tudor-like domain -containing protein [Arabidopsis thaliana] gb\|AAY27057.1\| At5g40550 [Arabidopsis thaliana] gb\|ABD19675.1\| At5g40550 [Arabidopsis thaliana] dbj\|BAF00954.1\| hypothetical protein [Arabidopsis thaliana] gb\|AED94562.1\| SGF29 tudor-like	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	SGF29 tudor-like domain	IPR010750	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
87	66	33			0.997452
90		33	66		0.997452
93		66	33		0.997452
95		33	66		0.997452
96	66	33			0.997452
97			66	33	0.997452
98			66	33	0.997452
99	66		33		0.997452
100	66		33		0.997452
101		33	66		0.997452
103	66		33		0.997452
105	66	33			0.997452
107		33	66		0.997452
112	33	66			0.997452
164	75	25			0.996473
166	75			25	0.996473
168			25	75	0.996473
170			25	75	0.996473
171	25	75			0.996473
174	75	25			0.996473
175		75		25	0.996473
179		25		75	0.996473
180	75			25	0.996473
187		25		75	0.996473
414		14		85	0.999981
418	14			78	0.999974
419	78	14	7		0.999974
423		11		88	0.999952
426		17		82	1.0
427	82		17		1.0
429	87	12			0.999964
431		12	87		0.999964
433		12		87	0.999964
483		88		11	0.999937

SSRs (tot: 1)

Start position	End position	Sequence	Length
278	289	TGA TGA TGA TGA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain