SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14969

Length: 1324 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14969

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25943	24/26

Source	Descriptions	Term	Type	Identity
AutoFact	Coronatine-insensitive protein, putative n=1 Tax=Ricinus communis RepID=B9SWQ0_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	coronitine insensitive 1	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	stomatal movement	GO:0010118	Biological Process	75%
Blast2go	response to insect	GO:0009625	Biological Process	75%
Blast2go	negative regulation of defense response	GO:0031348	Biological Process	75%
Blast2go	jasmonic acid mediated signaling pathway	GO:0009867	Biological Process	75%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	75%
Blast2go	response to wounding	GO:0009611	Biological Process	75%
Blast2go	regulation of flower development	GO:0009909	Biological Process	75%
Blast2go	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	GO:0031146	Biological Process	75%
Blast2go	shade avoidance	GO:0009641	Biological Process	75%
Blast2go	response to far red light	GO:0010218	Biological Process	75%
Blast2go	defense response to fungus	GO:0050832	Biological Process	75%
Blast2go	protein binding	GO:0005515	Molecular Function	75%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Leucine-rich repeat 2	IPR013101	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ74

Fln msg: Overlapping hits, possible frame ERROR between 215 and 215, Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 169 - 603

Fln protein: S*PWLSLRCSKLTRFGLYLRPGGLTDRGLGYIGKYSTNVRWMLLGFVGEHEQGLLEFSKGCSKTGELGCExxCFTESEIAEAVLNLKSLKYIWVQGYKGTATGEELLAMSRPFWNIEFTPPLKVTRDELDDMEEESSGHQPAQILAYYSLAGRRTDNPESVILLSPHS*

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGTAGCAAGTTAACCAGATTTGGATTGTACTTAAGGCCTGGAGGATTGACTGACAGAGGGCTTGGTTATATTGGAAAATACAGTACAAATGTAAGGTGGATGCTGTTGGGATTTGTTGGAGAACATGAACAGGGTCTCCTTGAATTTTCAAAGGGATGCTCAAAAACTGGTGAGCTTGGCTGTGAGxxxxxxTGTTTCACTGAATCTGAAATAGCAGAAGCAGTGCTGAACTTGAAATCCTTGAAGTATATCTGGGTGCAAGGATACAAAGGAACGGCAACAGGTGAGGAGCTTCTGGCTATGTCACGGCCATTTTGGAACATAGAGTTTACCCCACCTCTCAAAGTGACAAGAGATGAACTTGATGATATGGAAGAAGAATCCAGTGGACACCAACCGGCACAGATCTTGGCTTACTATTCTCTGGCCGGAAGAAGAACAGATAATCCAGAGTCTGTGATCCTTTTATCACCTCATTCTTGATAAGTAGCAAAAATGTAAGTTGAATTATGCATTTCTTGATTGTAACATGGAATTATGTACAGTAAGCAGCAGGAGATGATGAGGTGGCTGAACAATTATGCCTCACCCAATTAGTGTGTTTTCCTAACAGTCCGGACAGATAAATCTTGCCATTCAGCTCTCATATTCTTCCTACTGCTGCTTGTCAAATAAGATTTTAGCGGACGTAACCATTCCATTATGCTTGTCTATTACCTCTTGTGAAAGGAGTGTCTGCTGGCCATGCTCTCTTCCCAGTATCATGTTTTGAGGTCTGCAGTTATACTTATACTACCACATTTTTATTTGATCTGCTGTGCACTAGCCTTCTATACCTTCTCTGTGAGATGCCCTTGGTGAGTCAGCTAAATTTCTTCCATTAAGTCAAATTCTACACCTACCTTCTGTATGATCTAAAAGGGCTCTCCGTTTAGAATATTTACATGGCTTTAGTAATAACAGTGTTGGAAGGTCCTAGAGAGATGCTACAGTTTTTACACTGAAAAGAGGCAGGCATGCACAAAGCTTTAGATGCGTGGATTCTGTATCCTAAAGTCAGTTCTGAAGATGCGATTTGATGGGCAAGTCCACTTTGACCATTTGTTTTCCCACAGCTGCTTTTGAGATAAATACATTCATCAATGATGCTTTTAACGGTTTAACCAGAGCTCCAAATTCCATAGTTTCCTTAGGAGAAGCTAGATATAAGTTGGTATGGTATAGCTCTGTTTGAGCTTTTATTAGTTTCAAAGATAATGTGGACAATTGATTCTTATGATTTAGAATTGCACATACAAT

Fln Alignment:

Contig14969___CSKLTRFGLYLRPGGLTDRGLGYIGKYSTNVRWMLLGFVGEHEQGLLEFSKGCSKTGEL---GxxxTESEIAEAVLNLKSLKYIWVQGYKGTATGEELLAMSRPFWNIEFTPPLKVTRDEL-DDMEEESSGHQPAQILAYYSLAGRRTDNPESVILLS
B8LQ74________________CQKLSRFAFYVRPGGLTDTGLAYIGEYSTNVRWMLLGFAGETDQGILEFSKGCPKLERLEIRGxxxSESALAAAVLRLKSLKYIWVQGYNATVTGANLLAMARPYWNIEFSPGLQSTKDVLVEDMAAEKMQDRVAQLLAYYSLAGNRTDHPESVIPLA

SNPs (tot: 66)

Position	A %	C %	G %	T %	Probability
392			33	66	0.997452
394		33	66		0.997452
395	66		33		0.997452
400		33		66	0.997452
401	66			33	0.997452
405	66	33			0.997452
406	66			33	0.997452
409	66			33	0.997452
410		33	66		0.997452
412	66	33			0.997452
415	33	66			0.997452
475		33	66		1.0
476	66		16	16	0.988813
477		16		83	0.994512
478	83	16			0.994512
479	83		16		0.994512
481	16	83			0.994512
483	83	16			0.994512
484			83	16	0.994512
485	83			16	0.994512
487			16	83	0.994512
492		16	83		0.994512
496	16	83			0.994512
685			20	80	0.995493
688		80	20		0.995493
693		20	80		0.995493
694		80		20	0.995493
697		75	25		0.996473
698		25		75	0.996473
705	75	25			0.996473
707	75	25			0.996473
709	25		75		0.996473
710	75			25	0.996473
769		75		25	0.996473
770		25		75	0.996473
843		14	85		0.993533
844	85		14		0.993533
850		14		85	0.993533
851			85	14	0.993533
855	85		14		0.993533
860		14		85	0.993533
862		14		85	0.993533
901	14			85	0.993533
903	85	14			0.993533
913	87		12		0.992554
915		12		87	0.992554
916	87		12		0.992554
917	87			12	0.992554
919	12			87	0.992554
921	87	12			0.992554
922	87			12	0.992554
923	87			12	0.992554
924			12	87	0.992554
925			12	87	0.992554
928	87			12	0.992554
934	87	12			0.992554
935	12	87			0.992554
969	87	12			0.992554
970	87		12		0.992554
972	87	12			0.992554
973			12	87	0.992554
975			12	87	0.992554
978	87			12	0.992554
985		12		87	0.992554
987		12	87		0.992554
1069		66		33	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain