SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14949

Length: 1807 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14949

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15544	9/10
SustainPine v2.0	sp_v2.0_unigene62560	1/10

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: SINA2p isoform 2 [Vitis vinifera] ref\|XP_002280243.1\| PREDICTED: SINA2p isoform 1 [Vitis vinifera] emb\|CAB40578.1\| SINA2p [Vitis vinifera] emb\|CBI29998.3\| unnamed protein product [Vitis vinifera]	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	e3 ubiquitin-protein ligase sinat2	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Seven-in-absentia protein, sina	IPR004162	-	-
Sma3	Seven-in-absentia protein, TRAF-like domain	IPR018121	-	-
Sma3	Seven In Absentia Homolog-type	IPR013323	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, SIAH-type	IPR013010	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV72

Fln msg:

Fln protein: MSQGSDCREISELGSLDSDITINRGDRDIDSPTKSTAASSGKGGISLTNGVHELLDCPICSNSMYPPIHQCPNGHTICSSCKLRVHNRCPTCRHELGNIRCLALEKVAESLELPCRYQKLGCHDIFPYYSKLKHEQQCMFRPYSCPYAGSECSVTGDIPALVTHLRDDHKVDMHNGCTFNHRYVKPNPQEVENATWMLTVFNCFGQQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFGYSLEVGANGRKLCWQGIPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRQELKLRVTGRIWKEQR*

Protein Length: 308

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGGGACAACAAGCTCAAAGCGTCGTGACCTTGAGCTGTTACTCAAACATTCAGATACCCACAACAGCTTAAACAGCGCCAGGGGTCTATTAACCACAGATCCTTCCGAGCCCGATATAAATCCTCATCCCATGTGACCGTAGGCCGAGCAGGGTTGCCTCCGAGGGCATTTGAGTGGGCACTTTCTCGCTCAAGATGACCGGGGAGCTGGAATTTCCGAAATCATTAGTAGGGCGTTGAATTGACGGATTTGATTCACTGTATGCGTTTGCTTATAATAAGTTTGGTGTTTGGGAGTCGTTCCATTGCTGAGATTGAGGTACCCAATGGCCACCTACAATGAAGGTTATATCCTTTTGTTTGAATAATAAAGGGTGAAAGCCTAAGTCATTCAACAAAGATGTGAAAAGATATAGTGGTGATTTGACTTTCGAGAATCAGACACTAGGGTGTAGTTTTGCAAATTATCTTGAATTGCAAC_-_ATGTCTCAGGGAAGTGACTGCAGGGAGATATCCGAATTAGGTTCTTTAGATTCGGATATCACCATTAATAGGGGTGATAGAGACATTGATTCCCCAACTAAATCTACAGCTGCATCTTCTGGTAAAGGTGGTATATCTCTGACAAATGGTGTACATGAGCTTCTTGACTGCCCTATCTGTAGTAACTCTATGTACCCTCCTATTCACCAGTGTCCAAATGGTCATACTATTTGTTCAAGCTGCAAGTTGAGAGTGCACAACCGTTGCCCCACTTGCAGACATGAACTGGGGAATATAAGATGCTTGGCTCTTGAAAAGGTTGCAGAATCTCTGGAACTTCCTTGCAGATATCAAAAGCTTGGTTGTCACGACATATTCCCATATTATAGCAAGCTCAAGCATGAGCAACAATGCATGTTCAGGCCTTACAGTTGCCCTTATGCAGGTTCTGAATGCTCAGTTACTGGGGACATTCCAGCGCTTGTGACTCACTTGAGAGATGATCACAAGGTGGACATGCACAATGGCTGCACCTTCAATCATCGATATGTAAAACCTAATCCTCAGGAGGTGGAGAATGCAACATGGATGCTGACGGTATTCAACTGTTTTGGTCAACAATTCTGTCTTCACTTTGAGGCATTCCAGCTTGGAATGGCCCCTGTGTATATGGCCTTTTTGCGCTTTATGGGTGATGATAATGAAGCAAAAAATTTTGGCTACAGTCTTGAAGTGGGGGCAAATGGACGAAAGCTGTGTTGGCAAGGAATACCAAGAAGCATTCGCGACAGCCATAAGAAAGTCCGGGACAGTCATGATGGTTTGATTATTCAGAGGAATATGGCCCTTTTTTTCTCTGGTGGTGACAGGCAAGAGCTGAAACTGAGGGTCACAGGCCGTATATGGAAAGAACAGAGATGA___TGCTACCGTATATGGAAAGAACAGAGATGGTGCTATGGAATTGTCTTATTTGTAAATCCTACTAGATAGTGGGTCCATGACTCATTGTAGTCTAATCTACCTCGAATTTGGAGTAAAATTATTAATGAAGGGTTTGATGTGTTAATCTATATTGAGTCTGCAGGTGATGGAAGCATTTGGTGTTCGCATGCTCAAGTCTGATGCAAAAATGTAGTGTTGTGGAGCATACGCATTTCAATGTGTGTACCTTTTAATACTTTGTTCTGCCTTTTTGGAACTGCCATGTATGAGGATTTAGAGGACAAGGGGAATGGTGCTGTTTATGTCATATGTCTTAAGAAAATCTGTGACCATATTACTGTTGTGGAGATCATGACATT

Fln Alignment:

Contig14949___MSQGSDCREISELGSLDSDITINRGDRDIDSPTKSTAASSGKGGISLTNGVHELLDCPICSNSMYPPIHQCPNGHTICSSCKLRVHNRCPTCRHELGNIRCLALEKVAESLELPCRYQKLGCHDIFPYYSKLKHEQQCMFRPYSCPYAGSECSVTGDIPALVTHLRDDHKVDMHNGCTFNHRYVKPNPQEVENATWMLTVFNCFGQQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFGYSLEVGANGRKLCWQGIPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRQELKLRVTGRIWKEQR
A9NV72________________MSQGSDCTEISELGTLDSVIGIARGDIDIVSPPKASTASSGKGGISLTNGVHELLDCPICSNSMYPPIHQCPNGHTICSSCKLRVHNRCPTCRHELGNIRCLALEKVAESLELPCRYQKLGCHDIFPYYSKLKHEQQCMFRPYSCPYAGSECSVTGDIPALVTHLRDDHKVDMHNGCTFNHRYVKPNPQEVENATWMLTVFNCFGQQFCLHFEAFQLGMAPVYMAFLRFMGDDNEAKNFGYSLEVGANGRKLCWQGIPRSIRDSHKKVRDSHDGLIIQRNMALFFSGGDRQELKLRVTGRIWKEQR

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
46	40	60			1.0
49	40	60			1.0
50		40	60		1.0
51	40			60	1.0
53	60		40		1.0
55	40	60			1.0
56			40	60	1.0
57			40	60	1.0
60	40		60		1.0
61	40	60			1.0
63	40		60		1.0
65		40		60	1.0
67		60		40	1.0
218	87		12		0.992554
219	87			12	0.992554
220		12	87		0.992554
221	87		12		0.992554
227			87	12	0.992554
230		12	87		0.992554
231	87			12	0.992554
234		12		87	0.992554
235			87	12	0.992554
236		12	87		0.992554
246	88	11			0.923564
247	88		11		0.923564
250	88		11		0.923564
252			11	88	0.923564
254		11	88		0.923564
256	88			11	0.923564
259		11	88		0.923564
260		88		11	0.923564
263		11		88	0.923564
264			88	11	0.923564
265	88	11			0.923564
299		10		90	0.90298
300	90		10		0.90298
302	90	10			0.90298
303	90		10		0.90298
305	87		12		0.992554
307		12	87		0.992554
308		12		87	0.992554
316	12			87	0.992554
317		12		87	0.992554
318			85	14	0.993533
319		14	85		0.993533
320	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain