SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14892

Length: 1766 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14892

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22589	98/98

Source	Descriptions	Term	Type	Identity
AutoFact	Lipid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RNR6_RICCO	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	uncharacterized protein	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF1336	IPR009769	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVR7

Fln msg:

Fln protein: MSQSHRFEPATGPETDWKEEVLRGGSLQQVDPEDGVNGWSSPHGNLFHVRGSNYFSRKQKVPAGDWLLKPLGMDWLKANSKLDHVLSRPDNRVMAALSKANRDGKGLKTFVFAVNLQVPGREPHSAVFYYATDDPIPVGSLFYRFIHEDDHFRNSRFKIVNRIVKGPWIVKTAVGNYAACLLGKALRCNYIKGSNYFEIDVDIGSSALASAILHLALGYVTSVTVDMGFLVESQAEEELPERLLGAVRVSQMQMGSAARVDVVAAEDRCGGKPSGENYQGSGFQRNKFGRGFSLLKNAHPQKVEAEAAEEEANRKHVS*

Protein Length: 320

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACCGCTTTCGAGACTCATCTCGTCTCCGCTTCCTCTGTGGACTGTTTCGGCACTGGGTTTACAAGTTAGCAATTCTGTTGTGCTTTTCATCCGAGTACAGTCGATTTGTGATTTTTTTGCCTTGTTCTTCTTCTGGCTTTG_-_ATGTCTCAATCTCATAGATTCGAACCCGCGACGGGTCCGGAGACAGATTGGAAGGAAGAAGTCCTGCGAGGGGGTTCGCTGCAGCAGGTGGATCCCGAAGATGGTGTCAATGGCTGGTCGTCTCCTCACGGAAACTTGTTTCACGTCCGGGGTTCGAATTATTTCTCCAGGAAACAGAAAGTTCCTGCTGGAGACTGGTTGCTGAAACCCCTGGGCATGGACTGGCTCAAGGCCAATTCGAAGCTCGACCATGTGCTCTCCCGCCCTGATAACAGAGTGATGGCAGCGTTGAGCAAAGCCAACCGCGATGGGAAAGGCCTGAAAACGTTTGTTTTTGCTGTGAATTTGCAGGTTCCCGGCCGGGAGCCGCATAGTGCCGTATTCTATTATGCGACCGACGATCCAATCCCGGTGGGTTCGCTTTTCTACCGTTTTATCCACGAAGATGATCATTTTAGGAACAGTAGATTCAAGATCGTGAACCGCATTGTGAAGGGCCCATGGATCGTCAAGACCGCCGTGGGCAATTATGCAGCTTGCCTGCTGGGAAAGGCGCTGAGATGTAACTATATAAAGGGTTCGAACTATTTTGAAATCGACGTGGACATCGGGTCCTCTGCCCTTGCGAGCGCCATTCTCCACCTGGCTTTAGGATATGTGACTTCTGTGACCGTCGATATGGGGTTTCTAGTGGAATCTCAGGCCGAGGAAGAACTCCCGGAGAGGCTCTTAGGGGCTGTTAGGGTTTCTCAGATGCAGATGGGCTCTGCCGCAAGGGTGGATGTCGTTGCTGCCGAGGACCGGTGCGGTGGAAAGCCGTCGGGGGAAAATTATCAAGGATCGGGGTTTCAGCGGAACAAATTCGGTAGGGGTTTTTCACTTCTGAAGAATGCGCATCCTCAGAAGGTTGAAGCTGAAGCTGCTGAGGAAGAAGCCAACAGAAAACATGTTAGCTGA___ATTTCCTTATAAAGCCTCTATAAAGCCCCAAAACTAGTATTAATACTAGTTTACCTCCTCCACTTTTTCCACGAGTCCACTGTTCAACTGATGAGCTGATACAGTGCGCAGTGGGAAGAAACGTTTCCTGAGTTTTATGTAATATTCCTGTTTAGCTTCTTTCTTGTCTTGTCTTTTAGCTCTATAGGAAGCTGCTAGTCATTAAATTCATCCTTGATCAGGCTGTTCTGTATCGATTTCTCATGATCGCCCTTGGCTGGTGGAGCCCTTTGTTTTCATTATGCTCATGCTCACTGATTCTGCCTATCATTCAATATAAACGCACATTAGCTGTGGCAGATGTAGGTCTAGATGTGGATCGTTGAGCTCACTCATGAAGAAGATTAAGATGTATACATTACTTCTCGCAATTGAGCTGTTTAAACGGAATTAAAGGGATATATCTATGCCGTTACCAGGGAGATCGTATGTGCGCTGACTAAAATATGGCAATCATATACTGTTTGGATAGGTTTTACAAAGTTATTTTTGTTTAGAAATTGCAGTTTTTGTGAATAGGGATGCTTTAGAACTTGAGTTAGAAATACATGCAGTCCTTGAAGCATCCTCGGTTATAGTTTGCAATGTTTTATTTTAGTGATAAA

Fln Alignment:

Contig14892___MSQSHRFEPATGPETDWKEEVLRGGSLQQVDPEDGVNGWSSPHGNLFHVRGSNYFSRKQKVPAGDWLLKPLGMDWLKANSKLDHVLSRPDNRVMAALSKANRDGKGLKTFVFAVNLQVPGREPHSAVFYYATDDPIPVGSLFYRFIHEDDHFRNSRFKIVNRIVKGPWIVKTAVGNYAACLLGKALRCNYIKGSNYFEIDVDIGXXXXXXXXXXXXXGYVTSVTVDMGFLVESQAEEELPERLLGAVRVSQMQMGSXXXXXXXXXXXXCGGKPSGENYQGSGFQRNKFGRGFSLLKNAHPQKV--XXXXXXXXXNRKHVS
A9NVR7________________MSQSQGFESATDPEIDWKEEILRGGSLQQVDPEDGINGWSSPPGNLFHVRGSNYFTKKQKVPAGDWLLKPLGMDWLKAGSKLDHVLGRPDNRVMAALSKANSDGKGLKTFVFAVNLQVPGREPHSAVFYYATDDPIPVGSLFYRFIHEDDHFRNSRFKIVNRIVKGPWIVKTAVGNYAACLLGKALRCNYIKGSNYLEIDVDIGSSALASAILHLALGYVNSVTVDMGFLVESQAEEELPERLLGAVRVSQMQMGSAARLDVVAAEDRCGGKPSGENYQGSGFQRSKLGRGLSLLKNAHPQKVKAEAAEEEEEGNIKHVS

SNPs (tot: 119)

Position	A %	C %	G %	T %	Probability
36	88	11			0.999937
38	88			11	0.999937
41		88	11		0.999937
43		11		88	0.999937
46		88		11	0.999937
48			11	88	0.999937
51		88		11	0.999937
53	11		88		0.999937
58	11	88			0.999937
67		27		72	1.0
117	7	84		7	0.99801
119	92	7			0.999664
124	92	7			0.999664
125			92	7	0.999664
127		92	7		0.999664
129	92	7			0.999664
132	7			92	0.999664
133		7	92		0.999664
135		7	92		0.999664
159			8	91	0.999766
222	93	2			0.983471
224		4	95		0.996599
302		38		61	1.0
435	88	11			0.999937
437	88	11			0.999952
585	20			80	0.995493
587			80	20	0.995493
601		16		83	0.994512
602			16	83	0.994512
604	83		16		0.994512
605	16			83	0.994512
608	83			16	0.994512
609		83		16	0.994512
611	83		16		0.994512
612	83	16			0.994512
613			83	16	0.994512
614	83		16		0.994512
616		16	83		0.994512
809		85	14		0.993533
810	85			14	0.993533
812		85	14		0.993533
815	14		85		0.993533
817		14		85	0.993533
823	85	14			0.993533
825	85		14		0.993533
827		14	85		0.993533
828	14			85	0.993533
829		14	85		0.993533
830	85			14	0.993533
887		87	12		0.992554
888		87		12	0.992554
890		12	87		0.992554
891	87	12			0.992554
892			87	12	0.992554
893	87			12	0.992554
895		12	87		0.992554
898		87	12		0.992554
900		12		87	0.992554
903		16	83		0.994512
904			83	16	0.994512
905		16	83		0.994512
906	16	83			0.994512
924		14		85	0.993533
926		85		14	0.993533
927	85	14			0.993533
932	14		85		0.993533
933		14	85		0.993533
936		85		14	0.993533
937			14	85	0.993533
940		85		14	0.993533
942		85		14	0.993533
943	85	14			0.993533
945		14	85		0.993533
946		12	75	12	0.975346
947		12	87		0.992554
948	12			87	0.992554
949		12	87		0.992554
954	12			87	0.992554
956		12	87		0.992554
963		85		14	0.993533
968		14	85		0.993533
969	85			14	0.993533
971	14	85			0.993533
986		83		16	0.994512
1006	83		16		0.994512
1107	84		15		0.999986
1108	84			15	0.999986
1143		85	14		0.999981
1148		14		85	0.999981
1149	84			15	0.999986
1150	83			16	0.999991
1151	83		16		0.999991
1155		66		33	1.0
1156		86	13		0.999973
1157		66	20	13	1.0
1158	64	14		21	1.0
1159	78		21		1.0
1160	85	14			0.999981
1161	64	21		14	1.0
1163	14			85	0.999981
1164	78			21	1.0
1166			21	78	1.0
1167	78	21			1.0
1173	80	13		6	0.999961
1177	13			86	0.999973
1233	88	11			0.999952
1237		88		11	0.999952
1240	88	11			0.999952
1241			87	12	0.999964
1245			87	12	0.999964
1246	87		12		0.999964
1247	87			12	0.999964
1248		12	87		0.999964
1250	87	12			0.999964
1251	87			12	0.999964
1410		9		90	0.999872
1417	91			8	0.999807
1584	88	11			0.923564
1585		88	11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain