SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14822

Length: 955 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14822

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8474	43/46

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin interaction motif-containing protein [Arabidopsis thaliana] gb\|AAL47453.1\| At1g43690/F2J6_4 [Arabidopsis thaliana] gb\|AAO11534.1\| At1g43690/F2J6_4 [Arabidopsis thaliana] gb\|AEE31987.1\| ubiquitin interaction motif-containing protein [Arabidopsis	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	82%
Blast2go	ubiquitin interaction motif-containing protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	0.0	-
Sma3	Ubiquitin interacting motif	IPR003903	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
35		33		66	0.997452
37		66	33		0.997452
43	33		66		0.997452
46		40	60		1.0
47			20	80	0.995493
49		80	20		0.995493
50	60		20		0.99255
51	60	20	20		0.99255
52			60	40	1.0
54	20			80	0.995493
59		80	20		0.995493
60			20	80	0.995493
67	80	20			0.995493
162		18		81	1.0
169		12		87	0.999964
170		12		87	0.999964
172		81	6	12	0.999943
173		87	12		0.999964
174	81		18		1.0
175		12		87	0.999964
182		10	89		0.999919
183	15		84		1.0
222	42		57		1.0
708	25			75	0.996473
724	25			75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain