SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14806

Length: 1123 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14806

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21090	14/16

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein kinase n=1 Tax=Cucumis melo subsp. melo RepID=E5GB79_CUCME	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	serine threonine-protein kinase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	82%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Interleukin-4/interleukin-13, conserved site	IPR018096	-	-
Sma3	Dil domain	IPR018444	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPY3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 56 aas, your sequence is shorter than subject: 253 - 295

Fln protein: MGTSSNSSSSGFLTDQLSKKTSILGLRLWVLIGIGVGVFIVLILFCLSIWLTSRKKSKRLPEKLPSALIPMISKEIQEVRIDPLGGHNNNSPMGGAQFAKG*FQR*GFGKICVADWVWASCLKPSSDTERASSEVDSGINVKPIERQSLLRPHSQKPQKKVEEGRHEIGVVVERERINAGDRHGFVSSDKGSTASGETPRSTESPSTSVPEVSHLGWGHWYILRDLEIATNGFSDENVIGEGGYGIVYRGSQ*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTTGGATGGTGTGAAAATGGCCTCTTTTTTCTATTCGTAGAAGTAACCGTTGAACTCTTGGTGGCGAAAAATTGGGCGTGACGTCTTGAGCTTGGCTGTGTTTCATTTTTCAACACCATTGATCATAAATGTGCAAGACTTATCTTGCTTCTTGACCTTGGCTGTCCCTCAAGTTCATGGCTGTCGTATTTGCAATCCTAGGGTCTTCAGACACTCTGTTGCTGCTGAAAATGTAGCAGGCAGATTATGTCTGTTAAGCTCATGAACACTCCATAGTATCTGCCCCTGTTATATTCTTTCACATTCAAATCAAGAT_-_ATGGGAACTTCTAGTAATAGTAGCAGCTCAGGTTTTCTCACTGATCAGTTGTCTAAGAAGACTTCGATATTGGGGCTGAGATTGTGGGTGCTTATTGGGATTGGAGTGGGTGTGTTCATTGTTCTGATATTGTTTTGCTTATCAATATGGCTGACATCAAGGAAGAAGTCCAAGAGGTTGCCTGAGAAGCTGCCATCTGCTTTGATCCCCATGATATCCAAAGAGATTCAAGAAGTGAGGATCGATCCACTGGGTGGCCACAACAACAACAGTCCCATGGGTGGTGCTCAGTTTGCGAAGGGATGATTCCAGCGATAGGGATTTGGAAAAATCTGTGTTGCAGATTGGGTATGGGCATCTTGTCTAAAACCCAGTTCTGATACGGAGAGAGCAAGCTCTGAGGTGGATTCGGGCATCAATGTAAAGCCGATTGAAAGACAGTCTCTGTTGCGCCCACATAGTCAGAAGCCACAGAAAAAGGTTGAAGAAGGGCGCCATGAAATAGGTGTTGTGGTTGAGAGGGAGAGGATTAATGCAGGGGACAGGCATGGTTTTGTATCGTCTGATAAGGGGTCTACTGCAAGTGGAGAGACCCCCAGGTCAACTGAATCGCCTAGTACATCTGTGCCTGAAGTTTCACACCTTGGTTGGGGTCATTGGTACATTCTCAGAGACTTGGAGATCGCTACTAATGGTTTCTCAGATGAAAATGTCATTGGTGAAGGTGGCTATGGCATTGTCTATCGTGGTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

Contig14806___GFLTDQLSKKTSXXXXXXXXXXXXXXXXXXXXXXFCLSIWLTSRKKSKRLPEKLPS-ALIPMISKEIQEVRIDPL---GGHNNNSPMGGAQFAKG*FQR*GFGKICVADWVWASCLKPSSDTERASSEVDSGINVKPIERQSLLRPHSQKPQKKVEEGRHEIGVVVERERINAGDRHGFVSSDKGSTAXXXXXXXXXXXXXXXXXXXHLGWGHWYILRDLEIATNGFSDENVIGEGGYGIVYRG
C0PPY3________________GFLNNELSKKTSILGLKLWVVIGICVGAFIVLILFCLSVWLTSKRKSKRIPKKYPSTSKIPMVSKEIQEVKVDPIPLRAGHGHGTARDDTE------------KVVVQVGTGKRSNTPY-DNERVNPDVGA-INGRQCLRGQEIAGRGYHARAGPIDERHQICVEL-------GKDHRIISPEKPSSHCSGEARSSDTLSPAVPEVSHLGWGHWYTLRELEIATDCFSDDHVIGEGGYGIVYHG

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
197		33	33		1.0
200	66		33		1.0
202	66			33	1.0
204	33			66	1.0
205		33		66	1.0
207	57		14	28	1.0
209		14	85		0.993533
214	14			85	0.993533
216	42		42	14	1.0
218	85		14		0.993533
219			14	85	0.993533
220		14		85	0.993533
225	85	14			0.993533
229	14			85	0.993533
274	57		42		1.0
412	50		50		1.0
433		11	88		0.923564
436		11	88		0.923564
437		88	11		0.923564
439			11	88	0.923564
441		11		88	0.923564
443			88	11	0.923564
446	88	11			0.923564
448			11	88	0.923564
449			88	11	0.923564
450		11	88		0.923564
452		11	88		0.923564
453			11	88	0.923564
455		11	88		0.923564
456	11		88		0.923564
524		50		50	1.0
720	16	83			0.994512
855		16		83	0.994512
857			16	83	0.994512
861		42	57		1.0
863		28		71	1.0
864	28	14		57	1.0
866	66			33	1.0
869		16	83		0.994512
870		16	66	16	0.988813
871			83	16	0.994512
872	83			16	0.994512
873		16	83		0.994512
876		16	83		0.994512
877	66			16	0.988813
878		16	16	66	0.988813
879		16		83	0.994512
880	83	16			0.994512
881	83	16			0.994512
882		16		83	0.994512
883			83	16	0.994512
885	16		16		0.988813
888	16		83		0.994512
889		16	83		0.994512
935			80	20	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
603	614	ACA ACA ACA ACA	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain