SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14747

Length: 1893 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14747

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13657	47/59
SustainPine v2.0	sp_v2.0_unigene78743	7/59

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-arabinose 4-epimerase [Arabidopsis thaliana] ref\|NP_001031118.1\| UDP-arabinose 4-epimerase [Arabidopsis thaliana] sp\|Q9SA77.1\|ARAE1_ARATH RecName: Full=UDP-arabinose 4-epimerase 1; AltName: Full=UDP-D-xylose 4-epimerase 1 gb\|AAD25749.1\|AC007060_7 Stro	-	-	77%
FL-Next	sp=UDP-arabinose 4-epimerase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	udp-arabinose 4-epimerase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-arabinose 4-epimerase.	EC:5.1.3.5	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	UDP-glucose 4-epimerase.	EC:5.1.3.2	-	86%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	86%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	arabinose biosynthetic process	GO:0019567	Biological Process	86%
Blast2go	nucleotide-sugar metabolic process	GO:0009225	Biological Process	86%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	86%
Blast2go	galactose metabolic process	GO:0006012	Biological Process	86%
Blast2go	UDP-arabinose 4-epimerase activity	GO:0050373	Molecular Function	86%
Blast2go	UDP-glucose 4-epimerase activity	GO:0003978	Molecular Function	86%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	UDP-glucose 4-epimerase	IPR005886	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SA77

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 1172 and 1172,

Fln protein: MFPFGRRRTQPRASRSPGLIGMDHVDSGQRHHYIAKVLLAACLTIFCIIALRQSSGFNGSDVFSRHELGVTHVLVTGGAGYIGSHAVFRLLKDSYRVTIVDNLSRGNLGAVKLLKEQFPEPGRLQFICADLGDSKAVNKIFAENAFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLTVLEAMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAKKMAEDIIQDFSRKSNMAVMLLRYFNVIGSDPEGRLGEASRPELRxxGRISGACFDAARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELSWSAKYTNLKESLTVAWKWQKAHPNGYGSSPVAVI*

Protein Length: 419

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCCTCGTTTTCCATTGGGTTTTTGACTTGGATTGGAGTACCTAGGCACTTGTTTGTTCGGTGGGTTCATTCATTCTGCCCCGCCTATAAATTCGTCGTGACCTTGGCTGTCACGTCAGGGTCATTGAGAATTTCGTGATGTGTTCAAATTATATATATCCCTCTTAATGATCCCGATTGAGTATTGAGGTGAAGAAGTATACGCAGCAAACCGAGATCAGCGACCTTCATTGGCCGGATCCCTGTGCGCGCTGTATGCTTTGGTTTTGCTGTAGGAATTGGCGGTGAAGGACTCATTCTCTGGTTTTAATTGAGTTAGCAGGACCAATATTTTCAC_-_ATGTTCCCCTTCGGTCGACGGAGAACTCAGCCCCGAGCCTCAAGATCCCCGGGCCTCATAGGAATGGATCATGTAGATTCAGGGCAAAGACATCATTACATTGCTAAAGTTCTTTTGGCTGCCTGTCTTACCATTTTTTGTATTATTGCTCTGAGACAGTCATCTGGTTTTAATGGTTCAGATGTGTTCTCTAGGCATGAATTGGGGGTCACTCATGTGCTAGTAACAGGTGGTGCTGGTTATATTGGTTCACATGCTGTTTTTCGACTTCTAAAGGATTCCTACAGAGTAACCATTGTGGATAATCTTTCACGGGGAAATCTAGGGGCTGTAAAGCTTCTTAAAGAGCAATTTCCAGAACCGGGAAGGCTGCAGTTTATTTGTGCCGACTTGGGTGATAGCAAAGCGGTAAATAAAATATTTGCAGAAAATGCATTTGACGCAGTAATGCACTTCGCTGCTGTGGCTTATGTGGGCGAGAGCACAATGGATCCTCTTAGGTACTATCATAACATTACATCCAATACATTGACAGTATTAGAAGCCATGGCTGCGCATGGGGTGAAGAAACTGATATATTCAAGCACATGTGCAACTTATGGGGAACCTGCTAAAATGCCTATTACAGAGGAAACTCCTCAGGTTCCTATAAATCCATATGGAAAAGCAAAGAAAATGGCAGAGGACATTATCCAAGATTTTTCAAGAAAATCAAACATGGCTGTTATGCTATTGAGGTATTTCAATGTAATTGGTTCAGATCCAGAGGGCAGGTTAGGGGAAGCATCAAGACCAGAACTTCGGxxxxxxGGACGAATCTCGGGTGCATGCTTCGATGCAGCAAGGGGAATTATTCCTGGATTGAAAGTTAGAGGAACAGATTATAGTACTCCTGATGGTACCTGTATCAGGGACTACATTGATGTGACAGATTTGGTGGATGCGCATGTGAAAGCTTTGGTTAATGTTCGTCCTGGTGAAGTAAGGATATACAATGTTGGCACTGGAAAAGGCAGGTCAGTCAAGGAGTTTGTAGAAGCTTGCAAGGCTGCAACTGGAGTCAATATTACAGTAGAGTATCTTGGTCGGAGGCCAGGAGATTATGCAGAAGTATATAGTGATCCTTCCAAAATTAACCAAGAGTTAAGCTGGTCTGCAAAATATACAAATCTCAAGGAAAGCCTTACTGTAGCCTGGAAATGGCAGAAAGCACACCCCAATGGGTATGGATCATCCCCTGTAGCGGTGATTTGA___TTTTCCTATGTGGTGCCTTTTTGATATCTATCTGCTGCAATTCATTGTTGAAGCAAAAGCAGTGCCCTTGGTTATCCCATATGTGGGAACATGCCAAATCTGGTCGTATTGTACAGTATATGAGGAAAGTACTTGCGGGCATCTGTAGCAAATAAGAGTAGTTAGGATATTTATTGAGCTTATTTTTCCTCTCCAGCAAGGATGCTGGAGCAGCATTTTTCATTATTTCATAGCTGGGAGGTACATAATCTAAATAGAGATGGAGATCCTATTGA

Fln Alignment:

Contig14747___MFPFGRRRTQPRASRSPGLIGMDHVDSGQRHHYIAKVLLAACLTIFCIIALRQSSGFNGSDVFSRHELGVTHVLVTGGAGYIGSHAVFRLLKDSYRVTIVDNLSRGNLGAVKLLKEQFPEPGRLQFICADLGDSKAVNKIFAENAFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLTVLEAMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAKKMAEDIIQDFSRKSNMAVMLLRYFNVIGSDPEGRLGEASRPELRDHGRISGACFDAARGIIPGLKVRGTDYSTPDGTCIRDYIDVTDLVDAHVKALVNVRPGEVRIYNVGTGKGRSVKEFVEACKAATGVNITVEYLGRRPGDYAEVYSDPSKINQELSWSAKYTNLKESLTVAWKWQKAHPNGYGSSPVAV
Q9SA77________________MFSFGRARSQGRQNRSMSLGGLDYADPKKKNNYLGKILLTASLTALCIFMLKQSPTFNTPSVFSRHEPGVTHVLVTGGAGYIGSHAALRLLKESYRVTIVDNLSRGNLAAVRILQELFPEPGRLQFIYADLGDAKAVNKIFTENAFDAVMHFAAVAYVGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYGEPDIMPITEETPQVPINPYGKAKKMAEDIILDFSKNSDMAVMILRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIMPGLQIKGTDYKTADGTCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGYGLTTSSV

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
142	14	85			0.993533
146	57			14	1.0
148			71	28	1.0
150	28			71	1.0
152	71	28			1.0
156	71		28		1.0
157		28	71		1.0
158	71			28	1.0
159	71		28		1.0
161		28		71	1.0
162	28			71	1.0
164		28	71		1.0
165	28			71	1.0
224	14		85		0.993533
586			71	28	1.0
811	80	20			0.999996
814	80	20			0.999996
815	80		20		0.999996
818	20	80			0.999996
819	80	20			0.999996
823		80	20		0.999996
830	20			80	0.999996
831		20	80		0.999996
834		20	80		0.999996
836	20	80			0.999996
837	10			90	0.90298
1340	33		66		0.997452
1341		33		66	0.997452
1342		66		33	0.997452
1344	33			66	0.997452
1369		14	85		0.993533
1371		85		14	0.993533
1372	85	14			0.993533
1373		85	14		0.993533
1376	14		85		0.993533
1377	85	14			0.993533
1378	85	14			0.993533
1379	85			14	0.993533
1380	85			14	0.993533
1385			85	14	0.993533
1390		12	87		0.992554
1391		10		90	0.90298
1393	90			10	0.90298
1394	90			10	0.90298
1397	90			10	0.90298
1400		10		90	0.90298
1401	10			90	0.90298
1402		10	90		0.90298
1432	78	13	4	4	1.0
1433	78		4	17	1.0
1435	82	13	4		1.0
1437			17	82	1.0
1438	82			13	1.0
1441		17	78		1.0
1446		4	86	8	0.999539
1483		7		92	0.999664

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain