SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14727

Length: 1180 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14727

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2594	23/29
SustainPine v2.0	sp_v2.0_unigene34636	3/29
SustainPine v2.0	sp_v2.0_unigene66793	2/29

Source	Descriptions	Term	Type	Identity
AutoFact	heteroglycan glucosidase 1 [Arabidopsis thaliana] ref\|NP_001118685.1\| heteroglycan glucosidase 1 [Arabidopsis thaliana] gb\|AAL24303.1\| alpha glucosidase-like protein [Arabidopsis thaliana] gb\|AAO00865.1\| Unknown protein [Arabidopsis thaliana] gb\|AAP68250.	-	-	68%
FL-Next	tr=Putative alpha-xylosidase; Pinus pinaster (Maritime pine).	-	-	29%
Blast2go	alpha glucosidase-like protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:3.2.1.2-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	78%
Blast2go	maltose alpha-glucosidase activity	GO:0032450	Molecular Function	78%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	78%
Blast2go	chloroplast	GO:0009507	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Gamma-carboxyglutamic acid-rich (GLA) domain	IPR000294	-	-
Sma3	Glycoside hydrolase, family 31	IPR000322	-	-
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q8VWV9

Fln msg: Distance to subject end: 510 aas, atg_distance in limit (1-15): atg_distance = 6, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 311 - 910

Fln protein: MVGQEDPQGTGKMEHSRKMVFMPILEEDVYRFDYDGDARKYAFPSLSFADPKARDSLLEVSMHKVPEYIPFCECLQGQQVVTIELPHGSSFYGSGEVSGSLERSGKRVFTWNTDAWGYGHSTTSLYQSHPWVLAILPNGQAYGVLADTTKRCEVDLRRDSTIKFLASEVYPLITFGPFPSPTLVLRSLSHAIGTVFMPPKWSLGYHQCRWSYDTDARVLEVAKSFREKQLPCDVIWMDIDYMHGFRCFTFDPERFPDPQDLANDLHSKGFKAIWMIDPGIKKEEGYFVYDSGCSNDVWVQQTQGKPYVGEV

Protein Length: 312

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCAGTCTCGAACACCAGATTACTGGAGGTGGATCCATTCTTTTGCCCACGGCCGCAGCGGAGATTCCGCTTGCGTAACATTTCAAGCCGATCATTCCAAAGTTCGAAACTCGCGCGCTTCACAGCTGGTTTCGGTTTTAGGAGACAGGGACCATTGTGATAAGAACAAATCCCAGCAGAGAAATCTATCCTACTTGGAAAATCAGCAGTTAACATCGGAAATGGTTGGCCAGGAAGATCCACAAGGAACTGGAAAGATGGAGCACTCGAGGAAGATGGTTTTCATGCCTATCCTTGAAGAAGATGTTTATCGCTTTGATTATGATGGAGATGCAAGAAAATATGCATTTCCAAGTTTATCATTTGCAGATCCCAAGGCTAGAGATTCTCTCCTTGAAGTTTCTATGCACAAGGTGCCGGAGTACATTCCATTTTGTGAATGTCTGCAAGGACAACAAGTTGTTACCATTGAGCTTCCTCATGGTTCTTCCTTTTATGGTTCTGGAGAGGTTAGTGGTTCCCTGGAGCGATCAGGCAAGCGGGTATTTACATGGAACACTGATGCTTGGGGTTATGGTCATAGCACTACATCTCTTTATCAGTCTCATCCCTGGGTGTTAGCCATTCTGCCAAATGGGCAAGCCTATGGGGTTCTTGCTGACACTACAAAGCGGTGTGAGGTAGATTTGCGAAGAGACTCAACCATCAAGTTTTTGGCTTCAGAAGTCTATCCACTTATCACATTTGGCCCGTTTCCATCCCCAACTTTGGTTCTAAGATCTTTGTCACATGCTATTGGAACTGTATTCATGCCACCAAAATGGTCGCTTGGCTATCACCAATGCCGCTGGAGCTATGACACAGATGCTAGGGTTCTTGAGGTGGCAAAAAGTTTCCGGGAAAAACAGCTGCCTTGTGATGTCATATGGATGGACATAGATTACATGCACGGCTTTCGTTGTTTCACATTTGATCCAGAGCGATTTCCTGATCCTCAAGATTTGGCAAATGACCTTCATAGTAAAGGTTTTAAAGCTATTTGGATGATTGATCCTGGCATTAAAAAGGAGGAGGGATATTTTGTCTATGATAGTGGGTGCTCAAATGATGTATGGGTCCAGCAGACACAGGGAAAACCTTATGTGGGAGAGGTCT

Fln Alignment:

Contig14727___VTIELPHGSSFYGSGEVS--GSLERSGKRVFTWNTDAWGYGHSTTSLYQSHPWVLAILPNGQAYGVLADTTKRCEVDLRRDSTIKFLASEVYPLITFGPFPSPTLVLRSLSHAIGTVFMPPKWSLGYHQCRWSYDTDARVLEVAKSFREKQLPCDVIWMDIDYMHGFRCFTFDPERFPD--PQDLANDLHSKGFKAIWMIDPGIKKEEGYFVYDSGCSNDVWVQQTQGKPYVGEV
Q8VWV9________________VTTGLPATASLYGLGENTQPNGIKILPKEAYTLYTTDISAINLNTDLYGSHPFYMDVRNGGISHGVLLLNSNGMDVFYTGNALTYKVIGGVLDFYFFAG-TSPLDVVQQYTALIGRPVAQPYWAFGFHQCRWGYKNVSDITNVVENYNKSQIPLDVIWNDDDHMDGAKDFTLDPINYPEYKLRPFLDRIHANGMRYVVLIDPGIAINTSYGTFQRGMADDVFIKH-GGSPFLGQV

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
113		83		16	0.994512
185		50		12	1.0
186	50		12		1.0
189		12	87		0.992554
191		87		12	0.992554
193	87			12	0.992554
197		12		87	0.992554
198		12	87		0.992554
200		12		87	0.992554
202	87		12		0.992554
204	87		12		0.992554
208	87	12			0.992554
212		87	12		0.992554
213		87	12		0.992554
519		50	50		1.0
522	50		50		1.0
527	50			50	1.0
528		50		50	1.0
533		50	50		1.0
536			50	50	1.0
538		50		50	1.0
542		50	50		1.0
543	50		50		1.0
550	75		25		0.996473
754		28	71		1.0
755			28	71	1.0
757		28		71	1.0
758			28	71	1.0
761	28		71		1.0
763		28		71	1.0
765		71		28	1.0
766	71		28		1.0
768	71	28			1.0
769	71			28	1.0
773	28			71	1.0
774	71	28			1.0
777	28	71			1.0
865	75	25			1.0
866	75		25		1.0
868		25	75		1.0
871	25	75			1.0
872		25	75		1.0
880	75		25		1.0
899		62		37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain