SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14696

Length: 330 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene14696
CGTCGTGACCTTGGCTGTCACTCAATTACTATAAGATTTTTGTTTGAGCCAGTAAGCGGTTCATGGCAATGGGGAAGGGTTATTCACTGCTTTGCCCATTCTTTTTTGTTTTACTCATTCGTGTTTTGCAAGCTTCTCATCATGGGTGGGATGAAGCTATTTTGTCGACTCTCAGAGTATCCAAAATCCAGTTCCCCGGCGCCCCGAGAAGCTTATAGAACAGCGTATCATTTTCAGCCCGTTAAACATTGGATGAATGATCCAAATGCGCCATTGTTCTACAAGGGCTACTATCATCTGTTCTACCAATATAATCCCAAGTCGGCTGTG

Ace file of the UniGene uagpf_v2_unigene14696 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4838	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Cell wall invertase n=2 Tax=Fragaria x ananassa RepID=Q9ZP42_FRAAN	-	-	52%
FL-Next	sp=Beta-fructofuranosidase, insoluble isoenzyme 2; Daucus carota (Carrot).	-	-	47%
Blast2go	apoplastic invertase	-	-	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-fructofuranosidase.	EC:3.2.1.26	-	0.0	66%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	66%
Blast2go	Starch and sucrose metabolism	00500	66%
Blast2go	Metabolic pathways	01100	66%

Source	GOs	Term	Type	Identity
Blast2go	response to wounding	GO:0009611	Biological Process	66%
Blast2go	beta-fructofuranosidase activity	GO:0004564	Molecular Function	66%
Blast2go	cell wall	GO:0005618	Cellular Component	66%
Blast2go	response to karrikin	GO:0080167	Biological Process	66%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Glycoside hydrolase, family 32	IPR001362	-	-
Sma3	Histone H4	IPR001951	-	-
Sma3	Glycosyl hydrolases family 32, N-terminal	IPR013148	-	-
Sma3	Glycosyl hydrolase family 32, C-terminal	IPR013189	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 32, active site	IPR018053	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q39692

Fln msg: Distance to subject end: 494 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 110 - 592

Fln protein: RRDLGCHSITIRFLFEPVSGSWQWGRVIHCFAHSFLFYSFVFCKLLIMGGMKLFCRLSEYPKSSSPAPREAYRTAYHFQPVKHWMNDPNAPLFYKGYYHLFYQYNPKSAV

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTACTATAAGATTTTTGTTTGAGCCAGTAAGCGGTTCATGGCAATGGGGAAGGGTTATTCACTGCTTTGCCCATTCTTTTTTGTTTTACTCATTCGTGTTTTGCAAGCTTCTCATCATGGGTGGGATGAAGCTATTTTGTCGACTCTCAGAGTATCCAAAATCCAGTTCCCCGGCGCCCCGAGAAGCTTATAGAACAGCGTATCATTTTCAGCCCGTTAAACATTGGATGAATGATCCAAATGCGCCATTGTTCTACAAGGGCTACTATCATCTGTTCTACCAATATAATCCCAAGTCGGCTGTG

Fln Alignment:

Contig14696___VIHCFAHSFLFYS---FVFCKLLIMGGMKLFCRL-SEYPKSSSPAPREAYRTAYHFQPVKHWMNDPNAPLFYKGYYHLFYQYNPKSAV
Q39692________________LVTCF-HSMLFLSAVVFIFSLDVNIRGVEASHQVFPELQSVSAVNVQLVHRTGYHFQPKKHWINDPNGPMYYKGFYHLFYQYNPKGAV

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
149			66	33	1.0
150			33	16	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain