SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14689

Length: 547 nt

UniGene Fasta

>uagpf_v2_unigene14689
CGTCGTGACCTTGGCTGTCACTCAAACTCTGAATGTTTGCCAGGCTTATACCTTGAAAAGAATTAGAGACCCCAACTATCATGTACGTCGTGACCTTGGCTGTCAAAGGAAAGTTCAACCAAACCGGCAGCTGAATTGGTCAAACTTAATCCAACGAGTGAGTATGCACCAGGTCTGGAGGATACATTAATTCTAACCATGAAGGGCATAGCAGCTGGTATGCAGAACACTGGTTAGAAGGATTTTGGCAACAGATCAAGTATTTCTCAGGTTAGGACTATAATGGAGGTTTCTTGAGACCTACTTGTGAGGGGCCTTATCCAGATTCCAGTGTTAAAGGCAGCTTCTAAATGTGTCAAAGCACCAGCAAAAATACTGATCTGCCAGTGTAGATATGGTAATTTAATAAGCTTGAGAAGAGAGTGCATTCTGGTTGTCAGTTGATAACCATCAAGGATTTTAGTATAATGAGTAGAGGATTGTTATGATCTTTAAGATCCCTAATATGTTTATTTATATATATATATATATATATATATATGTAGAA

Ace file of the UniGene uagpf_v2_unigene14689

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4410	31/35
SustainPine v2.0	sp_v2.0_unigene77737	1/35

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoenolpyruvate carboxylase n=11 Tax=Spermatophyta RepID=CAPP_PICAB	-	-	94%
FL-Next	tr=Phosphoenolpyruvate carboxylase; Picea abies (Norway spruce) (Picea excelsa).	-	-	63%
Blast2go	phosphoenolpyruvate carboxylase	-	-	94%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoenolpyruvate carboxylase.	EC:4.1.1.31	-	0.0	94%

Source	KEGGs	Term	Type	Identity
Blast2go	Pyruvate metabolism	00620		94%
Blast2go	Methane metabolism	00680		94%
Blast2go	Carbon fixation in photosynthetic organisms	00710		94%
Blast2go	Carbon fixation pathways in prokaryotes	00720		94%
Blast2go	Metabolic pathways	01100		94%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	94%

Source	GOs	Term	Type	Identity
Blast2go	oxaloacetate metabolic process	GO:0006107	Biological Process	94%
Blast2go	carbon fixation	GO:0015977	Biological Process	94%
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	94%
Blast2go	photosynthesis	GO:0015979	Biological Process	94%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	94%
Blast2go	phosphoenolpyruvate carboxylase activity	GO:0008964	Molecular Function	94%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	94%
Blast2go	cytoplasm	GO:0005737	Cellular Component	94%

Source	InterPros	Term	Type	Identity
Sma3		IPR001449	-	-
Sma3	Phosphoenolpyruvate carboxylase, active site	IPR018129	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9SWG7

Fln msg: Overlapping hits, possible frame ERROR between 133 and 94, your sequence is shorter than subject: 79 - 955

Fln protein: VVTLAVTQTLNVCQAYTLKRIRDPNYHVRRxxxxxxxxxxxxxxxLVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG*

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTCTGAATGTTTGCCAGGCTTATACCTTGAAAAGAATTAGAGACCCCAACTATCATGTACGTCGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTGGTCAAACTTAATCCAACGAGTGAGTATGCACCAGGTCTGGAGGATACATTAATTCTAACCATGAAGGGCATAGCAGCTGGTATGCAGAACACTGGTTAGAAGGATTTTGGCAACAGATCAAGTATTTCTCAGGTTAGGACTATAATGGAGGTTTCTTGAGACCTACTTGTGAGGGGCCTTATCCAGATTCCAGTGTTAAAGGCAGCTTCTAAATGTGTCAAAGCACCAGCAAAAATACTGATCTGCCAGTGTAGATATGGTAATTTAATAAGCTTGAGAAGAGAGTGCATTCTGGTTGTCAGTTGATAACCATCAAGGATTTTAGTATAATGAGTAGAGGATTGTTATGATCTTTAAGATCCCTAATATGTTTATTTATATATATATATATATATATATATATGTAGAA

Fln Alignment:

Contig14689___TLNVCQAYTLKRIRDPNYHV--RxxxxxxxxxxxxxxxVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG
Q9SWG7________________TLNVCQAYTLKRIRDPNYHVNLRxxxxxxxxxxxxxxxVKLNPTSEYAPGLEDTLILTMKGIAAGMQNTG

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
86	33	66			0.997452
87	33		66		0.997452
90			66	33	0.997452
94	66		33		0.997452
98		33		66	0.997452
99	33		66		0.997452
100			66	33	0.997452
101		66		33	0.997452
178		25	75		0.996473
180	75			25	0.996473
181		25	75		0.996473
183	75			25	0.996473
184			25	75	0.996473
187	75	25			0.996473
190	75		25		0.996473
191	75		25		0.996473
192		25		75	0.996473
194		75	25		0.996473
196	75	25			0.996473
284	77	5	5	11	0.999842
285			10	89	0.999919
286	78	10	10		0.999769
287	84	10	5		0.999846
290		10	89		0.999919
292		15	80	5	1.0
293	5	10	85		0.999793
310		16		83	1.0
314	92	8			0.999718
316			88	12	1.0
318	8		92		0.999718
323	92		8		0.999718
324			8	92	0.999718
326	4	88	8		0.999262
327	88			12	1.0
328		8	92		0.999718
330		8		92	0.999718
538	91		8		0.999766
540	88		11		0.999952
544	81		18		0.999994

SSRs (tot: 1)

Start position	End position	Sequence	Length
515	541	TA TA TA TA TA TA TA TA TA TA TA TA TA T	27

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain