SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14560

Length: 394 nt

UniGene Fasta

>uagpf_v2_unigene14560
CGTCGTGACCTTGGCTGTCACTCAATGTGATTGCCGAGGGACTTGAAACCTTGAAAAATATGGCAGAAGATATAAATGAGGAATTGGACAGGCAGGTTCCCATTATAGATGAAATTGATACAAAAGCGGATCTAGCAACTGCTAACCTGAAGAACACAAATGTTAGGTTGAAAGAGACACTTGTAAAGTTGCGTTCCAGTCGCAATTTTTGTATTGATATTATACTTCTTTGCATAATATTGGGGATTGCAGCATATCTATACAATGCCTTAAAGTAGGAGCAGAACGCAGTTTTCTTGATACTAGAGAAGACAAAAGCAATCACTTCTTGACAGAGTTTGATGATCTAAACGTTGTTTCTATACTGCTTGCACTTCTCAGAGAAAATCTAGAA

Ace file of the UniGene uagpf_v2_unigene14560

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4406	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	putative syntaxin 71 (SYP71) [Oryza sativa Japonica Group]	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	syntaxin-71	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	protein targeting to membrane	GO:0006612	Biological Process	80%
Blast2go	SNAP receptor activity	GO:0005484	Molecular Function	80%
Blast2go	protein transporter activity	GO:0008565	Molecular Function	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Histone chaperone, ASF1-like	IPR006818	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC68

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 92 - 267

Fln protein: S*PWLSLNVIAEGLETLKNMAEDINEELDRQVPIIDEIDTKADLATANLKNTNVRLKETLVKLRSSRNFCIDIILLCIILGIAAYLYNALK*

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTGATTGCCGAGGGACTTGAAACCTTGAAAAATATGGCAGAAGATATAAATGAGGAATTGGACAGGCAGGTTCCCATTATAGATGAAATTGATACAAAAGCGGATCTAGCAACTGCTAACCTGAAGAACACAAATGTTAGGTTGAAAGAGACACTTGTAAAGTTGCGTTCCAGTCGCAATTTTTGTATTGATATTATACTTCTTTGCATAATATTGGGGATTGCAGCATATCTATACAATGCCTTAAAGTAG___GAGCAGAACGCAGTTTTCTTGATACTAGAGAAGACAAAAGCAATCACTTCTTGACAGAGTTTGATGATCTAAACGTTGTTTCTATACTGCTTGCACTTCTCAGAGAAAATCTAGAA

Fln Alignment:

Contig14560___LNVIAEGLETLKNMAEDINEELDRQVPIIDEIDTKADLATANLKNTNVRLKETLVKLRSSRNF
D5AC68________________LDMISEGLDTLKNMAQDINEELDRQVPLIDEIDTKVDKATSDLKNTNVRLKDTVNKLRSSRNF

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
16		20		80	0.995493
18			16	83	0.994512
21		83	16		0.994512
23		66	33		1.0
24	83		16		0.994512
25	50	16			1.0
26		16		66	0.988813
27			83	16	0.994512
30	83		16		0.994512
31		16		83	0.994512
34		83		16	0.994512
36	16		83		0.994512
37	83	16			0.994512
38			83	16	0.994512
39		16	83		0.994512
40	16		83		0.994512
97		14		85	0.993533
141		12	87		0.992554
142		87	12		0.992554
144	87		12		0.992554
150	87	12			0.992554
151	87			12	0.992554
153	87	12			0.992554
156	87			12	0.992554
182		11		88	0.923564
185	88		11		0.923564
187	88	11			0.923564
188		11	88		0.923564
192		88	11		0.923564
193		11	88		0.923564
195			11	88	0.923564
196		88		11	0.923564
202			88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain