SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14513

Length: 824 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14513

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14554	35/39
SustainPine v2.0	sp_v2.0_unigene71830	2/39

Source	Descriptions	Term	Type	Identity
AutoFact	putative transcription factor [Oryza sativa Japonica Group] gb\|ABF99747.1\| acyl-CoA binding family protein, putative, expressed [Oryza sativa Japonica Group]	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	acyl- binding protein 4	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	78%
Blast2go	lipid transport	GO:0006869	Biological Process	78%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	78%
Blast2go	fatty-acyl-CoA binding	GO:0000062	Molecular Function	78%
Blast2go	protein binding	GO:0005515	Molecular Function	78%
Blast2go	nucleus	GO:0005634	Cellular Component	78%
Blast2go	cytosol	GO:0005829	Cellular Component	78%

Full-Lengther Next Prediction

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
85	66	33			0.997452
86	66		33		0.997452
87	66			33	0.997452
88	66	33			0.997452
94		33		66	0.997452
95			66	33	0.997452
96	66			33	0.997452
97	66		33		0.997452
100			25	25	0.995533
101	50		25	25	0.995533
102	50	25		25	0.995533
103	50	25	25		0.995533
104	75			25	0.996473
105		25	75		0.996473
106	75			25	0.996473
107	50	50			1.0
108	25	75			0.996473
113	75	25			0.996473
117	75	25			0.996473
118	25			75	0.996473
119	75	25			0.996473
121		25		75	0.996473
222	80	20			0.995493
223	80		20		0.995493
225		20	80		0.995493
226		80	20		0.995493
227	80			20	0.995493
234	81		18		0.999994
243	81	18			0.999994
257		89		10	0.999919
260		5	83		0.999887
261		11	88		0.999937
265	83	11		5	0.999887
276	89	10			0.999919
436	88	11			0.999952
439			11	88	0.999952
442	11		88		0.999952
443	88	11			0.999952
444		11	88		0.999952
449	88	11			0.999952
452	11		88		0.999952
566	90		10		0.999898
574		5		85	0.999793

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain