SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14498

Length: 699 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14498

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18226	27/33
SustainPine v2.0	sp_v2.0_unigene80995	3/33

Source	Descriptions	Term	Type	Identity
AutoFact	Leafy cotyledon 1 n=2 Tax=Pinaceae RepID=E3P6R9_PSEMZ	-	-	90%
FL-Next	tr=CCAAT-box binding factor HAP3-like protein; Pinus sylvestris (Scots pine).	-	-	70%
Blast2go	ccaat-box binding factor hap3-like protein	-	-	79%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	-
Sma3	Transcription factor, NFYB/HAP3, conserved site	IPR003956	-	-
Sma3	Transcription factor, CBFA/NFYB, DNA topoisomerase	IPR003957	-	-
Sma3	Transcription factor CBF/NF-Y/archaeal histone	IPR003958	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	VQ	IPR008889	-	-
Sma3	Histone-fold	IPR009072	-	-
Sma3	DEK, C-terminal	IPR014876	-	-

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
163	66		33		1.0
164	66			33	1.0
165	33	33	33		1.0
167			33	66	1.0
170	33		66		1.0
171		33	66		1.0
175			33	66	1.0
177	66	33			1.0
184		33		66	1.0
227	13	86			0.999973
228		13		86	0.999973
229		20	80		1.0
230	80		6	13	0.999961
231	80			20	1.0
235		6	80	13	0.999961
236	80		13	6	0.999961
241	80			20	1.0
242		13	86		0.999973
244		6	80		0.999961
279		11	88		0.999952
287		11	88		0.999952
291	88	11			0.999952
292	11		88		0.999952
308	8	12	80		1.0
311			16	84	1.0
312			12	88	1.0
314	88			12	1.0
316	84	4			1.0
318		12	84	4	1.0
319	12		88		1.0
320		12	88		1.0
679			16	83	0.994512
680		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain