SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14469

Length: 607 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14469

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10403	11/15
SustainPine v2.0	sp_v2.0_unigene64564	4/15

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[G] COG3250 Beta-galactosidase/beta-glucuronidase	-	-	6.0e-31	27%
FL-Next	sp=Mannosylglycoprotein endo-beta-mannosidase; Lilium longiflorum (Trumpet lily).	-	-	0.0	46%
Blast2go	mannosylglycoprotein endo-beta-mannosidase-like	-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	77%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	77%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	77%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	77%
Blast2go	Glycosaminoglycan degradation	00531	77%
Blast2go	Metabolic pathways	01100	77%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	77%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	77%
Blast2go	cation binding	GO:0043169	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal	IPR004100	-	-
Sma3	Glycoside hydrolase, family 2	IPR006101	-	-
Sma3	Glycoside hydrolase, family 2, immunoglobulin-like beta-sandwich	IPR006102	-	-
Sma3	Glycoside hydrolase, family 2, N-terminal	IPR006104	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 2/20, immunoglobulin-like beta-sandwich domain	IPR013812	-	-

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
39			33	66	0.997452
44			33	66	0.997452
46	66	33			0.997452
47		33		66	0.997452
50		66	33		0.997452
51			33	66	0.997452
56	66	33			0.997452
57	33		66		0.997452
58		33		66	0.997452
62	33			66	0.997452
90		33		66	1.0
92	66			33	0.997452
94	33			66	0.997452
103		20		80	0.995493
106	60		40		1.0
108			40	60	1.0
113		60		40	1.0
114	60		40		1.0
118	60		40		1.0
120	60	40			1.0
177			16	83	0.994512
180		83	16		0.994512
183		83	16		0.994512
185	83	16			0.994512
186	83	16			0.994512
188	83			16	0.994512
189		83	16		0.994512
190	83		16		0.994512
191		16	83		0.994512
194		83		16	0.994512
196	16	83			0.994512
198	83			16	0.994512
199		16	83		0.994512
200	16		83		0.994512
256			40	60	1.0
296	60			40	1.0
298	40	60			1.0
462	50			50	1.0
469		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain