SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14453

Length: 847 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14453

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14366	26/26

Source	Descriptions	Term	Type	Identity
AutoFact	Protein cbxX, chromosomal, putative n=1 Tax=Ricinus communis RepID=B9RKQ5_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein metabolic process	GO:0019538	Biological Process	83%
Blast2go	ATPase activity	GO:0016887	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	CbxX/CfqX	IPR000641	-	-

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
89		50		50	1.0
97	50			50	1.0
98	83		16		0.994512
101		16		83	0.994512
102	83	16			0.994512
105	83		16		0.994512
106	83		16		0.994512
107	83	16			0.994512
108	83			16	0.994512
141	75	16	8		0.99999
143		8	75		0.99999
144		16	83		0.999991
227		90	10		0.999898
228		10		90	0.999898
498	88		11		0.923564
502	88		11		0.923564
505	88	11			0.923564
506			88	11	0.923564
510		11	11	77	0.968132
511		11	11	77	0.968132
514		14		85	0.993533
515	71	28			1.0
516	85			14	0.993533
517	71	14		14	0.984337
518		71	14	14	0.984337
519		14	85		0.993533
520	83	16			0.994512
522			14	85	0.993533
524		14	85		0.993533
526	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain