SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14363

Length: 880 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14363

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22031	8/17
SustainPine v2.0	sp_v2.0_unigene63820	9/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain protein 1, putative n=1 Tax=Solanum demissum RepID=Q6L463_SOLDE	-	-	3.0e-34	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	lob domain-containing protein 1-like	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Oleosin	IPR000136	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Uncharacterised conserved protein UCP038127, LOB	IPR017394	-	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
100		57		42	1.0
101			57	42	1.0
103	42	57			1.0
105	42			57	1.0
107	57	42			1.0
110	42			57	1.0
116		42	57		1.0
117		42		57	1.0
119	57			42	1.0
123	57	42			1.0
124		57		42	1.0
186			27	72	1.0
189		72	27		1.0
190		72		27	1.0
191	72		27		1.0
192	27			72	1.0
195	72	27			1.0
196	72			27	1.0
197		72		27	1.0
199	72		27		1.0
201		72		27	1.0
202			27	72	1.0
398	90		10		0.90298
399		90		10	0.90298
400	90	10			0.90298
403			10	90	0.90298
405		10	90		0.90298
410	88			11	0.923564
413		88	11		0.923564
415	88			11	0.923564
417			88	11	0.923564
420		11	88		0.923564
421	88			11	0.923564
422		11	88		0.923564
579	75	25			0.996473
581			75	25	0.996473
582	75	25			0.996473
583			25	75	0.996473
584		75		25	0.996473
585		75	25		0.996473
588		25		75	0.996473
589			75	25	0.996473
590		75		25	0.996473
591	75		25		0.996473
597		25	75		0.996473
598	25		75		0.996473
599		25	75		0.996473
600	75			25	0.996473
602	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain