SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14360

Length: 1749 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14360

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15568	90/124
SustainPine v2.0	sp_v2.0_unigene16285	26/124
SustainPine v2.0	sp_v2.0_unigene61133	1/124
SustainPine v2.0	sp_v2.0_unigene61295	6/124

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ERF transcription factor 3 n=2 Tax=Vitis RepID=D3Y3F2_9ROSI	-	-	2.0e-33	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	ap2 erf domain-containing transcription factor	-	-	0.0	53%

Source	InterPros	Term	Type	e value	Identity
Sma3	AP2/ERF domain	IPR001471	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWS1

Fln msg:

Fln protein: MCGGAIISDFIIPPASRGRRVTARDIWPDFDKFSEFINGGAAVESFDVSVNVDDDEEDFDDDDFLDFEESYQNKKKKKQQPISPTKGFELPLARGLDGPAAKSAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTAEEAARAYDAAARKIRGKKAKVNFVDEPPPSVKKESNNAKGSKKESSKKIKSYTTPKADFFQGFKTANPSIAQYNFHQKSPNPSYDDLGYQNPLSPLHAICNRNFAAKQSSSALPAYSTEFSDFDDSEVDNMGPQPESFEPMKNIHKRKGYNSFESDISSVSADRSHISWATEVKTPEISSVPKAEADSDQYDFVDMSTPVATSVSAGSPEVMLPPFNNGLNKSPSVEDGVAAEKSPKLEESSQLEISEDLPSLESYPWLFQMPYFEGLDQSLQGVGIGDASFPDGENALQLWSFDAVPISDSAY*

Protein Length: 450

Fln nts: CGTCGTGACCTTGGCTGTCACTAATCACGGACCAGAGATTTCCAATATCAGCGTCGCAAGTCTTTGAGTATACGGGACGATTCCCGCCGTCGATCGTAATTCGTAGAATCTGGGCGCGGCTACAAAATCGCGTCGTGACCTTGGCTGTCACTCAAGTTCGGCCAGTGAGAAAGTTTGAGGGTTCACGTAATTGAGAGAGGACGCTATTTGGTTGCGATTTCGAGTGCTGTAAACAGGCAACGACGCTTGTTTTGCTTTAGAGTTTAACAGAAAAGAAGA_-_ATGTGTGGAGGTGCTATCATCTCGGACTTTATAATACCCCCTGCGAGCCGAGGCCGCCGGGTGACTGCCAGGGATATATGGCCCGATTTTGATAAGTTCTCTGAGTTTATTAATGGAGGTGCTGCGGTGGAGTCCTTTGATGTTAGTGTTAATGTCGATGACGATGAGGAGGATTTCGACGATGACGATTTCCTCGATTTCGAGGAGAGCTACCAGAACAAGAAGAAGAAGAAGCAGCAGCCGATATCACCCACCAAGGGTTTCGAGCTTCCTTTAGCTCGGGGCCTGGATGGACCGGCGGCTAAGAGCGCGGGGAGAAAGAGGAAGAATTTGTACAGAGGGATCAGGCAACGTCCATGGGGGAAATGGGCTGCAGAGATCAGGGATCCCAGAAAAGGCGCTAGGGTTTGGCTTGGTACCTTTAATACGGCGGAGGAAGCTGCTCGGGCTTATGATGCAGCTGCACGAAAGATCAGAGGTAAGAAGGCGAAAGTTAATTTTGTTGATGAGCCACCACCCTCCGTTAAGAAGGAAAGTAATAATGCCAAGGGTTCCAAGAAAGAGTCCAGCAAGAAAATAAAATCATATACTACCCCAAAGGCTGACTTTTTCCAAGGTTTCAAAACGGCGAACCCTTCGATTGCCCAATACAACTTCCATCAGAAATCCCCAAACCCTAGCTATGATGATCTAGGGTATCAAAACCCCTTATCGCCATTACATGCCATCTGCAATCGAAACTTCGCCGCCAAACAGTCAAGTTCCGCGTTGCCTGCATACTCCACTGAGTTTTCTGATTTCGATGATTCCGAGGTCGATAATATGGGACCCCAGCCTGAGAGTTTTGAACCGATGAAAAACATACATAAACGAAAAGGGTATAATTCCTTTGAGTCCGACATCAGCAGCGTGTCTGCTGATAGATCCCATATCTCGTGGGCTACAGAAGTGAAAACCCCTGAAATATCTTCTGTACCAAAAGCCGAAGCCGACTCTGATCAGTATGATTTTGTTGATATGTCTACGCCCGTTGCGACGAGTGTTTCAGCAGGCAGCCCTGAGGTAATGCTTCCTCCATTTAATAATGGTTTGAATAAATCTCCTAGTGTTGAAGATGGCGTCGCTGCCGAAAAATCCCCTAAATTGGAGGAAAGTTCACAGTTGGAGATCTCTGAGGACTTGCCTTCTTTGGAATCATATCCGTGGTTGTTCCAGATGCCGTATTTCGAGGGCCTGGATCAGTCGTTGCAGGGTGTGGGTATTGGTGACGCTTCTTTTCCGGACGGTGAGAACGCCTTGCAGCTTTGGAGTTTTGATGCTGTGCCTATTTCCGATTCAGCTTATTGA___ATTAGCCTTGAATCTCTTGCCTGTAAACAGTAATTAGTAATTATGCAAGAATCAAGGAGACTTGTTATGGCTTCGTTTTGTATGCCTTCGTCAAATAGGGAACTTATTTAGATTTTTCCTCTT

Fln Alignment:

Contig14360___MCGGAIISDFIIPPASRGRRVTARDIWPDFDKFSEFINGGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXYQNKKKKKQQPISPTKGFELPLARGLDGPAAKSAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTXXXXXXXXXXXXXXXXXXXXXVNFVDEPPPSVXXXXXXXXXXXXXXXXXXXXYTTPKADFFQGFKTANPSIAQYNFHQKSPNPSYDDLGYQNPLSPLHAICNRNFAAKQSSSALPAYSTEFSDFDDSEVDNMGPQPESFEPMKNIHKRKGYNSFESDISSVSADRSHISWATEVKTPEISSVPKAEADSDQYDFVDMSTPVATSVSAGSPEVMLPPFNNGLNKSPSVEDGVAAEKSPKLEESSQLEISEDLPSLESYPWLFQMPYFEG-LDQSLQGVGIGDASFPDGENALQLWSFDAVPISDSAY
A9NWS1________________MCGGAIISDFIIPPANRGRRVTARDIWPDFDKFSEFINGGAPVETFDVSVNVDDDDEDFDDDDFLDFDESYQNK----------------------------SAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTAEEAARAYDAAARKIRGKKAKVNFVDEPPP-IKKETNNGKGSRKESSKKIKSCTTPKADHFQGFKMANPSNTHLNFNQKSPNPSFDDLGFLNSESQLHSICNRNFATKQSSCALPAYSTDFSDFDESEVENLVPQPASFEPMKNIHKRKGFDYFDSDTSSVSVDRSHFSWIPEVKTPEISSVPKAEAESNQCNFADISTPVATSVSVGSPEVVLSPFNNGLNKSPSVED-VASEKSPKLEESSQLEISEDLPSLESYPWLFQLPYFEGNLDQSLQGVGIGEASFPDGENALQLWNFDAVPISDSAY

SNPs (tot: 138)

Position	A %	C %	G %	T %	Probability
426		43		56	1.0
451	4	4	90		0.938371
455			4	95	0.996599
467	95	4			0.996599
472		93	2	4	0.985381
475		4	95		0.99692
477		4		95	0.997494
480	7	90	2		0.999998
492		45		55	1.0
518	94		5		0.997984
519			92	7	1.0
521		94		5	0.9982
524		6		93	0.99903
525	93	6			0.999264
527		93		6	0.999364
528	92		7		0.999602
529		92	8		0.999718
531		88		12	1.0
532	88		8	4	0.999262
533		92		8	0.999718
536	92	8			0.999718
537			88	8	0.999262
538		8	88	4	0.999262
539	8		92		0.999718
540	8			91	0.999766
731	50			50	1.0
782		16		83	0.994512
785		16		83	0.994512
791		16	83		0.994512
793		83	16		0.994512
794	80		20		0.995493
796		80	20		0.995493
797	80			20	0.995493
799	20	80			0.995493
803	20	80			0.995493
808	57	14	28		1.0
810	85			14	0.993533
811	85	14			0.993533
813			85	14	0.993533
814	85		14		0.993533
816	85	14			0.993533
817		14	85		0.993533
820	85			14	0.993533
821			14	85	0.993533
822	85		14		0.993533
823	85	14			0.993533
826		85		14	0.993533
829	85	14			0.993533
830			85	14	0.993533
831		14	85		0.993533
832	14		85		0.993533
844	70	30			1.0
845			80	20	0.999996
847		80	20		0.999996
848			20	10	0.999998
849		90	10		0.90298
850	80			20	0.999996
851		10	90		0.90298
852		80		20	0.999996
853	70	20		10	0.999998
854	90			10	0.90298
855		20	80		0.999996
856	70		10	20	0.999998
857	70	30			1.0
858	90			10	0.90298
859	90		10		0.90298
862	90	10			0.90298
864	90	10			0.90298
1026		44		55	1.0
1041	44		55		1.0
1124		11	88		0.923564
1125		11		88	0.923564
1128			11	88	0.923564
1130	88	11			0.923564
1131	88			11	0.923564
1132		88	11		0.923564
1133		88		11	0.923564
1134		11	88		0.923564
1137		11	88		0.923564
1138	87			12	0.992554
1139	87	12			0.992554
1177		10		90	0.90298
1183	90			10	0.90298
1268	82			17	1.0
1269	82	17			1.0
1271		82		17	1.0
1272		82	17		1.0
1273	62		37		1.0
1274	81	18			1.0
1281			18	81	1.0
1283	81			18	1.0
1288		18	81		1.0
1348	60	40			1.0
1417			9	90	0.999872
1418		85		14	1.0
1424	90	9			0.999872
1425	85	4	9		0.999726
1427		9		90	0.999872
1431		13	81	4	1.0
1432		9	90		0.999842
1433	81			18	1.0
1434	81	4	4	9	0.999363
1435	90		9		0.999842
1442	86			13	1.0
1443		14	85		1.0
1444	7		7	85	0.997433
1446	3	7	88		0.998862
1448	88			11	1.0
1451		7		92	0.999602
1454		92		7	0.999602
1455			7	92	0.999602
1457	92	7			0.999602
1458			92	7	0.999664
1460	92			7	0.999664
1462	7			92	0.999664
1463		7		92	0.999664
1464			92	7	0.999664
1466	7	92			0.999664
1516		92	7		0.999602
1518		7	92		0.999602
1522		92	7		0.999602
1525		7		92	0.999602
1527			92	7	0.999532
1529		3	7	89	0.998606
1532	89			10	1.0
1534	3		89	7	0.998606
1535		10	89		1.0
1536	6	12		81	1.0
1537		6	90	3	0.997544
1541	9	3	87		1.0
1542		9		90	1.0
1543	87	9	3		1.0
1552			90	10	1.0
1568			93	6	0.999453
1569		6		93	0.999453
1571	93			6	0.999453
1580			7	92	0.999532
1675		69		30	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
499	513	AAG AAG AAG AAG AAG	15

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain