SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14249

Length: 816 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14249

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene314	26/29

Source	Descriptions	Term	Type	e value	Identity
AutoFact	U-box multi-domain protein	-	-	3.0e-17	45%
FL-Next	sp=U-box domain-containing protein 17; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	37%
Blast2go	protein	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	66%

Source	GOs	Term	Type	Identity
Blast2go	apoptotic process	GO:0006915	Biological Process	66%
Blast2go	defense response to fungus, incompatible interaction	GO:0009817	Biological Process	66%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	66%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	66%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	ThiJ/PfpI	IPR002818	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
249		11		88	0.999952
252		11		88	0.999952
253			11	88	0.999952
257		13		86	0.999973
258		13		86	0.999973
264	84		15		0.999986
275	12	12	75		0.975346
276	12		87		0.992554
283	12		87		0.992554
521	88	11			0.923564
523	88			11	0.923564
528		12		87	0.992554
529	87	12			0.992554
530	87			12	0.992554
531	87			12	0.992554
536		12		87	0.992554
543		12		87	0.992554
547	12		87		0.992554
669			85	14	0.993533
672		14		85	0.993533
746		25	75		0.996473
748	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain