SustainPineDB

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Assembly info
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14242

Length: 453 nt

UniGene Fasta

>uagpf_v2_unigene14242
CGTCGTGACCTTGGCTGTCACTCAATTTTTTCAGGAGCAGGGGGAATGGGACCGCCCGCTTCAGATGGCCCCATGCTCGATTCCTCCGAGCAGGTCTACATTTCTTCGCTCGCCCTTCTCAAAATGCTCAAACACGGTAGAGCTGGAGTGCCTATGGAGGTCATGGGGTTGATGCTTGGTGAGTTTGTTGATGAGTACACAGTCCGAGTTGTGGACGTGTTTGCCATGCCCCAGAGTGGTACTGGAGTGAGTGTAGAGGCAGTTGATCATGTTTTTCAGACAAACATGCTTGACATGCTTAAGCAAACTGGCAGGCAAGAGATGGTTGTAGGTTGGTACCATTCACATCCAGGTTTTGGATGCTGGCTTTCAGGTGTTGATATTAATACACAACAGAGTTTCGAGGCTCTGAATCAACGAGCAGTTGCTGTAGTGGTTGATCCATTCAAAGTG

Ace file of the UniGene uagpf_v2_unigene14242

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25664	10/12
SustainPine v2.0	sp_v2.0_unigene81609	1/12

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome non-ATPase regulatory subunit 14 n=21 Tax=Embryophyta RepID=PSDE_ARATH	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	26s proteasome non-atpase regulatory subunit 14	-	-	96%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	0.0	96%
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	96%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQK2

Fln msg: Distance to subject end: 159 aas, your sequence is shorter than subject: 136 - 308

Fln protein: MGPPASDGPMLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRQEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPFKV

Protein Length: 137

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTCAGGAGCAGGGGGA_-_ATGGGACCGCCCGCTTCAGATGGCCCCATGCTCGATTCCTCCGAGCAGGTCTACATTTCTTCGCTCGCCCTTCTCAAAATGCTCAAACACGGTAGAGCTGGAGTGCCTATGGAGGTCATGGGGTTGATGCTTGGTGAGTTTGTTGATGAGTACACAGTCCGAGTTGTGGACGTGTTTGCCATGCCCCAGAGTGGTACTGGAGTGAGTGTAGAGGCAGTTGATCATGTTTTTCAGACAAACATGCTTGACATGCTTAAGCAAACTGGCAGGCAAGAGATGGTTGTAGGTTGGTACCATTCACATCCAGGTTTTGGATGCTGGCTTTCAGGTGTTGATATTAATACACAACAGAGTTTCGAGGCTCTGAATCAACGAGCAGTTGCTGTAGTGGTTGATCCATTCAAAGTG

Fln Alignment:

Contig14242___IFSGAGGMGPPASDGPMLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRQEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPFK
C0PQK2________________IFSGAGGMGPPAPDGPMLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRQEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain