SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14186

Length: 827 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14186

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene4498	49/72
SustainPine v2.0	sp_v2.0_unigene18551	21/72

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome maturation protein, putative n=1 Tax=Ricinus communis RepID=B9SIZ5_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein Sb08; Picea mariana (Black spruce) (Abies mariana).	-	-	96%
Blast2go	proteasome maturation factor ump1 family protein	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	80%
Blast2go	proteasome complex	GO:0000502	Cellular Component	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome maturation factor UMP1	IPR008012	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
97	90	10			0.90298
98	90		10		0.90298
100		10		90	0.90298
105	90	10			0.90298
106			90	10	0.90298
107	90			10	0.90298
111			10	90	0.90298
114	10		90		0.90298
116		10	90		0.90298
117	10			90	0.90298
165		16	83		0.999991
186	75		16		0.99999
198	30	70			1.0
235		15	84		0.999986
237	84			15	0.999986
239			15	84	0.999986
243		15	84		0.999986
244			84	15	0.999986
245			84	15	0.999986
248		15		84	0.999986
250	84		15		0.999986
251	84			15	0.999986
252		16	83		0.999991
256			84	15	0.999986
257	84	15			0.999986
258	15	84			0.999986
345	90	10			0.90298
494	88	3	7		0.999079
502		93		6	0.999364
504			93	6	0.999364
507		6	89		0.998304
512	89			6	0.998304
557			8	91	1.0
558	91			8	1.0
560	8		91		1.0
566		91	8		1.0
567	91		8		1.0
568	91	8			1.0
569	91			8	1.0
571			91	8	1.0
572		8	91		1.0
573	8		91		1.0
608		2		89	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain