SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14180

Length: 447 nt

UniGene Fasta

>uagpf_v2_unigene14180
TAATCCTATCGATATATAGAGATCGTCGTGACCTTGGCTGTCACTCAATTAGTTTCGTTTTTGTGGGATTGAGCTTTGTCTGTACCTTCATCCCTCTTTATCTCGTAACATATAACTGAAGTGAAGTGAGAATGACAGACGCAGAGAGTACCCTGTCTAACTCTTCACACGCCGAAGTGCAAAGCCAGGCAGTGATCGAGACGAAGATGCTGGCAGCCGAGCTCTGTAAGCAATTCTACAGTCTCGGATGGGTTTCAGGAACGGGTGGCAGCATCACCATCAAAGTCCACGATCCTGCAATTGCCAAATCGCAACAGCTTATTGTAATGGCTCCATCAGGAGTACAGAAGGAAAGAATGAAAGCAGATGACATGTACGTGTTGTCCGCAAATGGCACCGTTCTGTCTGCTCCGTCGCCCAAGCCTTTACCTCACAAGCCCCCTTCGC

Ace file of the UniGene uagpf_v2_unigene14180

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1149	39/39

Source	Descriptions	Term	Type	Identity
AutoFact	Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 n=1 Tax=Populus trichocarpa RepID=MTBC_POPTR	-	-	70%
FL-Next	sp=Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1; subsp. trichocarpa).	-	-	66%
Blast2go	probable bifunctional methylthioribulose-1-phosphate dehydratase enolase-phosphatase e1-like	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Methylthioribulose 1-phosphate dehydratase.	EC:4.2.1.109	-	0.0	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Cysteine and methionine metabolism	00270		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Phosphoglycolate phosphatase.	EC:3.1.3.18	-	81%

Source	KEGGs	Term	Type	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		81%
Blast2go	Metabolic pathways	01100		81%
Blast2go	Acireductone synthase.	EC:3.1.3.77	-	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cysteine and methionine metabolism	00270		0.0	81%
Blast2go	Metabolic pathways	01100		0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	L-methionine salvage from methylthioadenosine	GO:0019509	Biological Process	81%
Blast2go	methylthioribulose 1-phosphate dehydratase activity	GO:0046570	Molecular Function	81%
Blast2go	phosphoglycolate phosphatase activity	GO:0008967	Molecular Function	81%
Blast2go	metal ion binding	GO:0046872	Molecular Function	81%
Blast2go	acireductone synthase activity	GO:0043874	Molecular Function	81%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Class II aldolase/adducin N-terminal	IPR001303	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	HAD-superfamily hydrolase, subfamily IA, variant 1	IPR006439	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3	Methylthioribulose-1-phosphate dehydratase	IPR017714	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: B9N1F9

Fln msg: Distance to subject end: 403 aas, your sequence is shorter than subject: 105 - 504

Fln protein: MTDAESTLSNSSHAEVQSQAVIETKMLAAELCKQFYSLGWVSGTGGSITIKVHDPAIAKSQQLIVMAPSGVQKERMKADDMYVLSANGTVLSAPSPKPLPHKPPS

Protein Length: 106

Fln nts: TAATCCTATCGATATATAGAGATCGTCGTGACCTTGGCTGTCACTCAATTAGTTTCGTTTTTGTGGGATTGAGCTTTGTCTGTACCTTCATCCCTCTTTATCTCGTAACATATAACTGAAGTGAAGTGAGA_-_ATGACAGACGCAGAGAGTACCCTGTCTAACTCTTCACACGCCGAAGTGCAAAGCCAGGCAGTGATCGAGACGAAGATGCTGGCAGCCGAGCTCTGTAAGCAATTCTACAGTCTCGGATGGGTTTCAGGAACGGGTGGCAGCATCACCATCAAAGTCCACGATCCTGCAATTGCCAAATCGCAACAGCTTATTGTAATGGCTCCATCAGGAGTACAGAAGGAAAGAATGAAAGCAGATGACATGTACGTGTTGTCCGCAAATGGCACCGTTCTGTCTGCTCCGTCGCCCAAGCCTTTACCTCACAAGCCCCCTTCGC

Fln Alignment:

Contig14180___SSHAEVQSQAVIETKMLAAELCKQFYSLGWVSGTGGSITIKVHDPAIAKSQQLIVMAPSGVQKERMKADDMYVLSANGTV
B9N1F9________________ASQAYLESKAVKDTRVLIADLCKQFYTLGWVSGTGGSITIKAHDDSIPKRQQLILMSPSGVQKERMEPEDMYVLATNGSI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
386		37		62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain