SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14072

Length: 1382 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14072

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene24868	22/57
SustainPine v2.0	sp_v2.0_unigene61774	21/57
SustainPine v2.0	sp_v2.0_unigene81858	10/57

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglucosylase/hydrolase protein 9, putative n=1 Tax=Ricinus communis RepID=B9S9N2_RICCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	xyloglucan endotransglucosylase hydrolase protein 9	-	-	77%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Glycoside hydrolase, family 16, active site	IPR008263	-	-
Sma3	Beta-glucanase	IPR008264	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AD91

Fln msg:

Fln protein: MAGCEGGRICIYWWAIIVMLCSLVVGSQCAAFNDLFYASWAADHVMSQGNLLQLKLDHTSGAGFASKSTYLFGKVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYVVQTNVYSNGVGNREQRIYLWFDPTANFHSYSFLWNRHQSVFFVDDVPIRVFSNNEKRGVPFPQTRPMGVYSSVWNADDWATQGGRVKTDWSHAPFISTYTSFNIDACKYSPGSSCTSWWDHPAYTSLTAKQSMQLKWVHDKYMIYDYCKDSVRFATPPAECTA*

Protein Length: 284

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCATCCTTATTTGAACTTTGATTCTTACGTTCAAAGGAAGAGTCGAGAAGGGGA_-_ATGGCGGGTTGCGAAGGAGGGCGTATCTGCATATACTGGTGGGCTATTATTGTGATGCTGTGCAGCCTGGTAGTGGGCTCTCAATGTGCAGCCTTCAACGATCTCTTCTACGCCAGTTGGGCTGCTGACCATGTTATGTCCCAGGGCAATTTGCTCCAGCTCAAGCTCGATCACACTTCTGGTGCAGGATTTGCTTCGAAGAGCACATACTTGTTCGGAAAAGTTAATGTTCAGATCAAGCTGGTTCCTGGCGACTCTGCTGGCACCGTCACTGCTTTCTATATGTCGTCCCAAGGTGATCAACATGATGAATTCGACTTTGAATTCTTGGGGAATACTTCAGGAGAACCGTACGTTGTGCAGACGAATGTTTATTCAAATGGGGTTGGCAACAGAGAGCAGCGTATTTACCTGTGGTTCGATCCAACTGCGAATTTCCATTCCTACTCCTTTCTCTGGAATCGCCACCAATCTGTTTTCTTTGTGGACGATGTGCCTATTAGGGTGTTTTCCAACAATGAGAAAAGAGGAGTCCCATTTCCTCAAACCCGCCCTATGGGCGTATACTCTTCAGTATGGAACGCAGATGACTGGGCTACTCAAGGTGGCCGCGTAAAGACCGATTGGAGCCACGCTCCTTTTATTTCCACATACACAAGTTTCAACATCGATGCTTGCAAATACAGCCCTGGCAGCTCATGTACTTCGTGGTGGGATCATCCCGCCTACACCTCACTTACCGCAAAGCAGAGCATGCAACTCAAGTGGGTACACGACAAATACATGATTTACGATTACTGCAAAGATTCAGTTAGATTTGCTACACCTCCAGCAGAGTGTACTGCATGA___TGTGGGCTCTTTTAACTTGACTCTCTACCGATTCCATGATCTTAATCACAAATATTTGTTCCACTTGTATTAGTTTTAGTAGAGCCCTGTGCATTCCTGATAGCTTGGATGTTGAAATCTCTTTATATGGATATGATAACCGTTAACTACGGTAGTTAGTTCATCTGATCACGCCAAAGTTTATGTTTTGGTGGCTCAGCAGAAGCACATAATTTTATGTTTTGGTGGCTCAGCAGAAGTACATATGAAGTGTAGGATTTGGGAACGAGAAGAGAGCGTCTCCGTCTCTCCTCGGCCTGCGCATGCAGTGACATTGAGAAAGTGCAGGATATTCTCCAAATCCGGAGATACGTCGTTGGTTTGTAAATGGCCAAATGTCTTGCTTTGAAATGTATAGAAGACTTTGGAACAGAATATTCAATAAAAATATGAGCATATAGGCCCGTTTCGC

Fln Alignment:

Contig14072___MAGCEGGRICIYWWAI--IVMLCSLVVGSQCAAFNDLFYASWAADHVMSQGNLLQLKLDHTSGAGFASKSTYLFGKVNVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDFEFLGNTSGEPYVVQTNVYSNGVGNREQRIYLWFDPTANFHSYSFLWNRHQSVFFVDDVPIRVFSNNEKRGVPFPQTRPMGVYSSVWNADDWATQGGRVKTDWSHAPFISTYTSFNIDACKYSPGSSCTSWWDHPAYTSLTAKQSMQLKWVHDKYMIYDYCKDSVRFATPPAEC
D5AD91________________MASCEGCRICIYWWLINIIVMLCSFVVGSQCAAFNDFFYPSWALDHVMSQGDLLQLKLDHASGAGFASKSTYLFGKANVQIKLVPGDSAGTVTAFYMSSQGDQHDEFDYEFLGNTSGEPYVVQTNVYSKGVGNREQRIYLWFDPTANFHSYSFLWNRQQAVFFVDDVPIRVFSNNEKRGVPYPQTRPMGIFSSIWNADDWATQGGRVKTDWSHAPFLSTYKNFNIDACKYTTGSSCSSWWDQPAYASLNEKQSMQLKWVHEKYMIYDYCKDSVRFPTPPAEC

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
74	88	11			0.923564
76	88			11	0.923564
77	88	11			0.923564
80	11		88		0.923564
81		11	88		0.923564
82	88	11			0.923564
83	88			11	0.923564
89			88	11	0.923564
92		11		88	0.923564
93	11		88		0.923564
95			88	11	0.923564
96	88	11			0.923564
269			90	9	0.999872
270		9	90		0.999872
343	20			80	1.0
352		80		20	1.0
370			83	16	0.999991
418		25		75	1.0
541			90	10	0.90298
768	87	12			0.992554
770		87		12	0.992554
772		87	12		0.992554
775	12		87		0.992554
777	87	12			0.992554
778			87	12	0.992554
779		87		12	0.992554
780			12	87	0.992554
781		87	12		0.992554
782	87	12			0.992554
791	12		87		0.992554
817		75		25	1.0
955		50		50	1.0
985		16		83	0.999991
1015	45		45	9	1.0
1103		63	36		1.0
1146			33	66	1.0
1269	10	90			0.90298
1341	83			16	0.994512
1344	16		83		0.994512
1345	83	16			0.994512
1347			16	83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain