SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene14026

Length: 1453 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene14026

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22788	178/186

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-expansin 11, putative n=1 Tax=Ricinus communis RepID=B9R8E5_RICCO	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	alpha-expansin 11	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMF3

Fln msg:

Fln protein: MVMGIIKRQAASLVKGFVIALVFSISVAEGSAYTSSGWTSGHATFYGGSDASGTMGGACGYGDLYSAGYGTKTAALSTALFNSGATCGACFQIQCDISKDPQWCLPGPQSITITATNFCPPNYALPSNDGGWCNPPLMHFDMAQPAWEKIAIYSGGIVPVQFRRVPCTPVGGVRFTINGRSYFELVLLSNVGGAGDISAVSIKGSNTGWQPMSRNWGANWQSNSYLSGQSLSFQVTTSDGNSITFYNVAPSNWQFGQTFATSQQFN*

Protein Length: 268

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGACACGGCTTTGCATCCAAGCACTAGCGCCTGCAACTTTTCTGGGTTGAGAAAGCTGAGTAAACCCATTTGATACA_-_ATGGTCATGGGGATCATAAAGCGCCAGGCAGCTAGTCTTGTGAAGGGATTTGTTATTGCATTGGTTTTTAGTATATCAGTTGCAGAGGGCAGTGCGTATACTAGTTCTGGATGGACCAGCGGCCATGCTACATTCTATGGAGGCAGCGATGCCTCTGGCACCATGGGGGGCGCTTGTGGATATGGTGATCTATACAGCGCTGGCTATGGCACTAAAACTGCAGCTCTGAGCACCGCTCTGTTTAACAGTGGGGCCACTTGTGGGGCATGCTTCCAGATACAGTGTGATATAAGCAAGGATCCACAGTGGTGTTTGCCAGGGCCACAATCGATAACAATCACAGCGACAAATTTCTGCCCTCCTAATTACGCTCTTCCCAGCAATGATGGGGGTTGGTGTAATCCTCCCCTCATGCATTTCGACATGGCCCAACCTGCGTGGGAGAAGATCGCCATTTACAGCGGAGGGATTGTGCCCGTTCAATTCAGAAGAGTGCCGTGCACACCTGTTGGAGGTGTTCGATTCACCATTAATGGCCGTTCGTACTTCGAGCTTGTCCTGCTCTCGAATGTGGGCGGAGCAGGGGATATTAGCGCGGTGTCGATTAAGGGTTCGAACACTGGATGGCAACCCATGTCCAGGAACTGGGGAGCCAACTGGCAGAGCAACTCGTACCTCAGTGGGCAGAGCCTGTCCTTCCAAGTGACCACCAGTGATGGCAATTCCATTACCTTCTACAACGTTGCCCCTTCGAATTGGCAATTCGGACAGACTTTTGCAACCTCGCAGCAGTTCAATTGA___TTTCGCAATCCTATGTTTTATTTCACTATATTTCGTATTTGTTTTATGACCAGTACCAGAATTCTATATAAGTTATCCTAAATCAGTACCAAAACTTCTGAAAATAACTCTGAATACAGTCCGGGTGCTTGAATGGCGGCAGCAGAGGCGAGCTTGATCATGAATCTTCGTTGCAGCAGCCCGCTGTTCTACCTATAACAGTTGTCACCGCCTCAGCCAAAAGTCGGTGGCTGAACTATCAAACCGTGCAGACTGTAGCTTTGTATAATCTGGTTATGGACCTTGTCATCCTTCTGTAAAGAGTGCGATATATTCTATAGATAGATAAATATCCATGTTGCTGATATTCTTCTTCTCGGCTCTGTGAGCCGAACCGTGTCCCAATGCTCTGTAGATTCGTAAAGGGTACTGTCCATTTTTAAAGCTTGGATAATAAATGCATGGTTCAGTTGAAAATAGAGTGATGAATTTCGAGAATGCTATTCGGCCTTTCTCTGTCTATTGTAAATTTTGATTTTGCATTGATTGCAGTACTGTTGGAGTTTGGAAAG

Fln Alignment:

Contig14026___IALVFSISVAEGSAYT-SSGWTSGHATFYGGSDASGTMGGACGYGDLYSAGYGTKTAALSTALFNSGATCGACFQIQCDISKDPQWCLPGPQSITITATNFCPPNYALPSNDGGWCNPPLMHFDMAQPAWEKIAIYSGGIVPVQFRRVPCTPVGGVRFTINGRSYFELVLLSNVGGAGDISAVSIKGSNTGWQPMSRNWGANWQSNSYLSGQSLSFQVTTSDGNSITFYNVAPSNWQFGQTF
B8LMF3________________LASVFCFWWIAGAAYALDSSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLTCGACYEMKCNEETDPQWCLPG--TVTVTATNFCPPNNALPNDNGGWCNPPLQHFDMAQPAYQQIAIYRGGIVPIMFRRVPCVRKGGVRFTINGHSYFNLVLITNVGGAGDVEAVSIKGSNSGWQAMSRNWGQNWQSNSYLNGQTLSFQVTTSDGRTVTSYNVAPANWQFGQTF

SNPs (tot: 114)

Position	A %	C %	G %	T %	Probability
177		14		85	0.999981
178	85		14		0.999981
186	14	85			0.999981
187	85	14			0.999981
188		14	85		0.999981
189	85			14	0.999981
190			85	14	0.999981
194	85			14	0.999981
197	14		85		0.999981
199		14	85		0.999981
200	14			85	0.999981
350	87	12			0.992554
353		14	85		0.993533
355			85	14	0.993533
357	14	85			0.993533
364			14	85	0.993533
365		14	85		0.993533
366			85	14	0.993533
368			85	14	0.993533
372		14	85		0.993533
373	14	85			0.993533
411		11	88		0.999937
429	85	10			0.999793
430	90		10		0.999898
436	90		10		0.999898
439	83	11			0.999887
440	88			11	0.999937
442		88	11		0.999937
445	88			11	0.999952
447		88		11	0.999952
448		11	88		0.999952
451	88			11	0.999952
452	88	11			0.999952
480	25			75	1.0
484		75		25	1.0
485	75		25		1.0
488	75			25	1.0
489	75		25		1.0
491		25	75		1.0
495		6	73		1.0
496	6	13	73		0.999956
497	13	6	80		0.999961
502		11	82		0.999919
808	86			13	0.999973
809	86	13			0.999973
816	85			14	0.999981
817		84		15	0.999986
882		18		81	1.0
883			14	85	1.0
888	80	15	3		1.0
889		85		14	1.0
890		85	2	11	1.0
891	14			85	1.0
893			85	14	1.0
895	91			8	1.0
896		8	75	5	1.0
897	2	86			1.0
898	86	2		7	0.999997
899		5	92		0.992495
901	5			94	0.998397
903	87	5	2	5	0.9224
904	87	7		5	0.999997
905			5	94	0.997984
906			5	94	0.997984
908	94	5			0.997984
909		5		92	0.991359
910		7	5	76	1.0
911		7		92	0.999999
912	4			23	1.0
913		92	7		0.999999
914	2		92	4	0.987114
915		92		7	0.999999
916	83		7	7	0.999972
917	88		7	4	0.999994
923	2	2	5	90	0.965994
927		5	2	92	0.991359
928		5		94	0.997984
929	94	5			0.9982
937	63		36		1.0
939	90	9			1.0
940	9	11		79	1.0
941	2	9	4	83	1.0
942			4	95	0.999975
943		94		5	1.0
944	1		90		1.0
945	4			91	0.997683
949		2		97	0.974293
950	2		97		0.974293
990	95	3		1	0.999569
993		97		2	0.949185
997	97			2	0.953846
1000	96			3	0.999943
1047		2	97		0.941605
1048			96	3	0.999917
1049		97		2	0.941605
1055	96			3	0.999917
1056		2	97		0.941605
1057	2		97		0.941605
1059			97	2	0.941605
1127		97	2		0.964186
1128	97			2	0.966038
1129	97	2			0.966038
1130	97		2		0.966038
1131	97			2	0.966038
1133	2			97	0.966038
1135		2	97		0.966038
1136			97	2	0.966038
1144	97			2	0.966038
1146	2			97	0.966038
1147	97	2			0.966038
1155			97	2	0.951554
1159	95			4	1.0
1161	95		1	3	0.999605
1293	92			7	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain