SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13989

Length: 1785 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13989

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11254	5/90
SustainPine v2.0	sp_v2.0_unigene21675	82/90

Source	Descriptions	Term	Type	Identity
AutoFact	prohibitin 1-like protein [Brassica napus]	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	prohibitin-like protein	-	-	96%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	96%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	96%
Blast2go	mitochondrial respiratory chain complex I	GO:0005747	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Sma3	Band 7 protein	IPR001107	-	0.0	-
Sma3	Prohibitin	IPR000163	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NT13

Fln msg:

Fln protein: MNFNNVRVPNVPGGGGAAWALTKAVVLGGLGLYGALNSLYNVEGGHRAIVFNRIVGVKDKVYPEGTHLMMPWFDRPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPMPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRRILTDRAANFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEATSAQLIGEAISNNPAFITLRKIEASREIAHTISNSTNRVFLSSDALLLNLQDMSLDDAHKPPPKPKK*

Protein Length: 299

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGTCTGAAAATTGATGCTTGGAAGGGTTTTGCAAGGGTTTTGTTGGCAAAAGCATAGCGGCCGCCAACAATTTGATGAAGTACGTCGTGACCTTGGCTGTCACTCAAGTTTTTGGGCAGGACTAGCAGTCGGATCAAGCAAGCAGAGGTCGACTCTTCCATAAGAAAGCAAGTGAGCATAAGCTGTTCGAGTAGGTCAGGAAGAGGAGGAGGAGG_-_ATGAACTTTAACAATGTAAGGGTGCCGAATGTGCCTGGAGGGGGAGGAGCTGCATGGGCGCTAACTAAAGCCGTAGTGCTGGGTGGGCTCGGCCTTTACGGAGCTCTAAACAGTCTGTACAATGTTGAGGGCGGTCACAGGGCTATTGTCTTCAATAGGATTGTCGGTGTCAAGGATAAGGTATATCCAGAAGGCACACATCTTATGATGCCTTGGTTTGATAGACCTGTCATTTATGATGTCAGAGCACGTCCCCATCTTGTAGAAAGCACTTCAGGCAGCCGTGATCTTCAGATGGTTAAGATTGGTCTCCGAGTTCTGACACGGCCAATGCCAGATCAATTACCAACTATTTACAGGACCCTTGGAGAGAATTACAACGAAAGAGTGTTGCCTTCAATCATCCACGAGACACTGAAAGCTGTGGTAGCACAGTACAATGCAAGTCAACTTATCACTCAGAGAGAGGCAGTAAGCAGAGAAATAAGGAGAATTTTGACGGACAGAGCTGCTAATTTTAACATTGCATTGGATGATGTCTCTATAACAAGCCTTACTTTCGGAAGAGAGTTCACAGCTGCCATTGAAGCAAAGCAAGTTGCCGCTCAAGAAGCCGAACGTGCCAAGTTTGTTGTCGAGAAGGCAGAACAAGATAAAAAGAGTGCTATCATTAGAGCTCAGGGAGAAGCCACAAGTGCTCAACTTATTGGTGAAGCTATTTCTAATAATCCAGCCTTCATCACGTTGAGAAAGATTGAGGCCAGCCGGGAAATAGCACACACTATCTCTAACTCAACTAATAGGGTCTTCTTGAGTTCTGATGCATTGCTGCTAAACCTTCAGGATATGAGTCTGGATGATGCACACAAGCCACCACCTAAGCCTAAAAAGTGA___TGAACACAATAGATTAAATTTTCACATTTTGTTTATGCTTGGTTACCATCTCTTGGAGGCCGTCTTATTTGCATCCAAATGTTGTGAACCTTCTGCATATCCAACTGGTGAAGGGCTGAACTACGGCTGATAATAATTTTTCTTATGGTATGATTGTCTGATTAGGATATTTTTTTCCATTACAATACTCTTCTTATAATATGATTCTGTCTGATCAGGCAATTTTTTTCAGTAATAAATATATCTTGGATTCCTTTCCGTTAGAGGATCAGTTCAGGGTTTTTCAGTGCCAGTGATCTTGAGAATCAGTTCAAGGTTTTTGATTGCCAGTGATCTTGAGGATCAGTTCATACTTCATAGTTTTTCAGTGCCAGTGTGGACCCTTGATTTTTGACCAACTTTGGTAGGATGGCTGATCATTGCAATACAATGTTCTTTGTAAGAAACATTTGTCAATGGATGATATGACTAGCGGTATTTGAATTTAGTTTCGGAAGGTTTTCATAGATGCCGTGATATGTTTTTGCGGATGATCTAGTACCAGTCCTATCTGAAAACATTAGTTGAGTGAAACTAAAGCCAGACTATAAGTTTGCCAACTGTTAGCTTTTGTTGAACTAAGCGGTTGTTCAATTGATAGCTTTCACGAG

Fln Alignment:

Contig13989___AAWALTKXXXXXXXXXXXXXXXXXXVEGGHRAIVFNRIVGVKDKVYPEGTHLMMPWFDRPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPMPDQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRRILTDRAANFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEATSAQLIGEAISNNPAFITLRKIEASREIAHTISNSTNRVFLSSDALLLNLQDMSLDDAH
A9NT13________________AAWALTRAIVLGGLGLYGALNSLYNVEGGHRAIVFNRIVGVKDKVYPEGTHLMMPWFDRPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPMPDQLPTIYRALGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRRILTERATNFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKKSAIIRAQGEATSAQLIGEAISNNPAFITLRKIEASREIAHTISNSSNRVFLSSDALLLNLQDMSLDDAH

SNPs (tot: 115)

Position	A %	C %	G %	T %	Probability
134		18	72		0.999994
135			18	81	0.999994
137		18		81	0.999994
138			18	81	0.999994
141	18		81		0.999994
142		18	81		0.999994
144	81			18	0.999994
145			81	18	0.999994
147	81		18		0.999994
150	81		18		0.999994
151			81	18	0.999994
154		18	81		0.999994
214	11	88			0.999952
215			82	17	1.0
217	5		82		0.999919
219	88	11			0.999952
220		11	88		0.999952
221	11		88		0.999952
222	11			88	0.999952
524	10	90			0.90298
542	90			10	0.90298
543	90	10			0.90298
545	90	10			0.90298
572	87			12	0.992554
609		12	87		0.992554
612	87			12	0.992554
613	50		50		1.0
615	87		12		0.992554
617			12	87	0.992554
622		57		42	1.0
679		62		37	1.0
742			40	60	1.0
745		40	60		1.0
760		40		60	1.0
775		40		60	1.0
784	40			60	1.0
798	80		20		0.995493
803		25		75	0.996473
804			75	25	0.996473
821	40			60	1.0
845		40		60	1.0
847		88		11	0.923564
849		88	11		0.923564
850	88		11		0.923564
851	77	11		11	0.968132
852		11	88		0.923564
853	77			11	0.968132
854	77	11		11	0.968132
855		11	88		0.923564
856		77	11	11	0.968132
857	33	55		11	1.0
858			88	11	0.923564
859	75		25		1.0
860	75	12		12	0.975346
861		87		12	0.992554
862	12		87		0.992554
863		12		87	0.992554
864		12	75	12	0.975346
865	12	87			0.992554
866	12	87			0.992554
867	87			12	0.992554
868	87	12			0.992554
869	12		87		0.992554
878		75	25		1.0
899	77		22		0.999999
901	77		22		0.999999
917	77		22		0.999999
941	15	7	7		0.999985
945	76	7	15		0.999983
950			15	76	0.999983
1021	90			10	0.90298
1038		85		14	0.999981
1039	78		21		1.0
1040	78		14	7	0.999974
1043	78		21		1.0
1044	85			14	0.999981
1045		21		78	1.0
1047			78	21	1.0
1048		22	77		1.0
1049	11		88		0.999937
1053	11			88	0.999937
1162	83			16	0.999991
1179		14	85		0.999981
1307	88	11			0.923564
1308			11	88	0.923564
1310		11		88	0.923564
1311			11	88	0.923564
1313			11	88	0.923564
1314	11			88	0.923564
1317	88			11	0.923564
1319			11	88	0.923564
1320	88		11		0.923564
1322	88			11	0.923564
1323	88		11		0.923564
1329	11			88	0.923564
1346		18		81	0.999994
1353		27		72	1.0
1355	81			18	0.999994
1359	80			20	0.999996
1360	77		22		0.999999
1362	22			77	0.999999
1363		22		77	0.999999
1365		22		77	0.999999
1366	22			77	0.999999
1384			20	80	0.999996
1386		20	80		0.999996
1388	80			20	0.999996
1389			20	80	0.999996
1390	20			80	0.999996
1395			20	80	0.999996
1397		80		20	0.999996
1400		20		80	0.999996
1403	77	22			0.999999
1404			77	22	0.999999
1405		22	77		0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
229	242	GAG GAG GAG GAG GA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain