SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13987

Length: 2324 nt

UniGene Fasta

>uagpf_v2_unigene13987
CGTCGTGACCTTGGCTGTCACTCATTCGAGGGCCTCGCGGCGTCGTGACCTTGGCTGTCACTCAGGCTTTTCTTCCTCTTCCTCCTTGAAGCTCAACAAGCTAAAGCTGCTGCTGCTCCTCCTCCTCTTGGTACCCACAATGTTTCTCCTGCTTTTTTTCATCACCACTGGATCTCTGCTCTACCGCGTCAACACCGCCCCTTATCCTGTTCAAATCTCCAGCACAAACACTCCCTACAATAATCACCTCCTACACGCCTACGTGGCCCGGACCTTCCTTGCCCTCAAGTCAGATCCGCTGAAAACCCGGTTGGATCTGCTGTTCAAGCAAGCGTATGACCACCTCAGCCTGATCAATGCATATGCTGCGTATGCCCGCAGACTCAAGCTTGAGAACATGAAGCAGGTTCGAATCTTCACAGATCAGGCCAGAAACTACACGGAACTAATGAATAAACCCGAGTATCGGGCTCTAATGGATACTAATGATATGATCGATGAAGAAACCCTTAGGCAATTTGAGAAGGAGGTGAAAGAAAGGATCAAGGTCACACGGCAATTGATTGCTGACGCTAAAGAGTCGTTTGATAACCAGTTGAAGATCCAAAAGCTCAAGGACACAATATTTGCTGTGAACGACCAGTTAACCCGGGCTAAGAAGCAGGGGGCTTTTGCTAGCTTAATTGCAGCTAAGTCCATCCCTAAGAGCATCCATTGCCTGTCTATGAGGTTAATGGAGGAACGGATCTCACAGCCAGAAAAGTATATTGATAAAGGCGACCCTCCGCCACAGTGGGAGGACCCTAACCTCTACCATTATGCCATATTTTCCGACAATGTCATTGCTGCTTCGGTTGTCGTCAATTCTGCAGTTAAGAATGCCAAAGAACCCTGGAAGCATGTATTTCATGTCGTAACCGACAAGATGAATCTTGCCGCAATGCAGGTCTGGTTCAAGATGCGCTCGCTAAATGGATCACATGTTGAGGTTAAAGCTGTTGAGGATTACAAGTTCTTGAATTCTTCCTATGTTCCGGTTTTGCGACAGCTCGAGTCCGCTAACTTGCAAAGGTTTTACTTCGAGAATAAGTTGGAGAATGCAACAAAGGATGCTCCTAATATGAAGTTTAGGAATCCCAAGTATCTTTCCATGTTGAATCATCTGCGCTTTTATTTGCCTGAGATGTATCCAAAGTTACACCGGATCTTGTTTCTAGATGATGATGTTGTTGTTCAGAAGGACCTGACGGGATTATGGGAGATAGATATGGAAGGAAAGGTTAACGGGGCTGTGGAGACATGCTTTGGTTCATTCCATCGTTATGATAAGTATATGAATTTCTCTCATCCTCTGATCAAGGCAAGATTCAATCCCAAGGCTTGTGGTTGGGCTTATGGAATGAATTTCTTCCACTTGGATGCATGGAGAAGGGAGAAGTGTACTGAAGAATATCACTACTGGCAAAACCTGAATGAGAATCGTACATTGTGGAAGCTGGGGACATTACCACCAGGCCTGATCACTTATTATAAAACAACCAAGCCTCTAGATAAATCTTGGCATGTTCTTGGTCTTGGATATAACCCCAGTATTAGTATGGACGAAATCCGCAATGCAGCCGTTGTTCACTTCAATGGAAATATGAAACCATGGCTTGATATTGGCATGAATCAATATCGAGACACCTGGACCAAGTATGTAGACTATGATATGGAGTTTATACAGATGTGCAACTTCGGTCATTGAAAAAAAATCTCAAGGATTTGGAGTTATTTTATTTAAGCCGGCTAACATGCCTACAATAAGGCATGGTTTTATGTTATGCTTTGTTGCTAATCATATCTCATCAAGTTGCTAAAACATTTTACGGTTTATGTAAGGAGATGTCCGAGAATGTTATAGCTTCCTTTTTAAATTTGTTTAGAGATCTGTTGTGACTTTTGTAATATTTGATTGCGCTGTTGTAAAGTTTCTACCCGTTTAATTGTTATTTGGTTCCTCAATTTATGTTGGTTCATGGGATCATGGACTAAACAGAGAACATATTTCCTTTACTTGGGAATTTATAGAGTACAATAGCAATGCACTCTGGCAGGTAGATTGTGTCATGTCATACCTGGCCAGCTGAGATGTGGCTGAGATGCAGACCTGCTTAGTTTCAAGAAGATAAGGGTTAAGAAAATAATTGGTAGAGCATCTTCTAGTATTAATAATGTTTTGATTTTTGATGTACATTAGGTGCACCTATCCAGGATGTTAATAGAATTTATGTTTTTAGGTGCATCTGTCAGGGATATTAATTGAATTCCCATGGTAAATATTG

Ace file of the UniGene uagpf_v2_unigene13987

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28164	215/233
SustainPine v2.0	sp_v2.0_unigene77174	4/233

Source	Descriptions	Term	Type	Identity
AutoFact	Glycosyltransferase, CAZy family GT8 n=3 Tax=Malpighiales RepID=B9GQM0_POPTR	-	-	80%
FL-Next	sp=Galacturonosyltransferase 8; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	quasimodo1-like protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	homogalacturonan biosynthetic process	GO:0010289	Biological Process	88%
Blast2go	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	88%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LSG3

Fln msg: your sequence is shorter than subject: 536 - 559

Fln protein: MFLLLFFITTGSLLYRVNTAPYPVQISSTNTPYNNHLLHAYVARTFLALKSDPLKTRLDLLFKQAYDHLSLINAYAAYARRLKLENMKQVRIFTDQARNYTELMNKPEYRALMDTNDMIDEETLRQFEKEVKERIKVTRQLIADAKESFDNQLKIQKLKDTIFAVNDQLTRAKKQGAFASLIAAKSIPKSIHCLSMRLMEERISQPEKYIDKGDPPPQWEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDAPNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFGH*

Protein Length: 537

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCGAGGGCCTCGCGGCGTCGTGACCTTGGCTGTCACTCAGGCTTTTCTTCCTCTTCCTCCTTGAAGCTCAACAAGCTAAAGCTGCTGCTGCTCCTCCTCCTCTTGGTACCCACA_-_ATGTTTCTCCTGCTTTTTTTCATCACCACTGGATCTCTGCTCTACCGCGTCAACACCGCCCCTTATCCTGTTCAAATCTCCAGCACAAACACTCCCTACAATAATCACCTCCTACACGCCTACGTGGCCCGGACCTTCCTTGCCCTCAAGTCAGATCCGCTGAAAACCCGGTTGGATCTGCTGTTCAAGCAAGCGTATGACCACCTCAGCCTGATCAATGCATATGCTGCGTATGCCCGCAGACTCAAGCTTGAGAACATGAAGCAGGTTCGAATCTTCACAGATCAGGCCAGAAACTACACGGAACTAATGAATAAACCCGAGTATCGGGCTCTAATGGATACTAATGATATGATCGATGAAGAAACCCTTAGGCAATTTGAGAAGGAGGTGAAAGAAAGGATCAAGGTCACACGGCAATTGATTGCTGACGCTAAAGAGTCGTTTGATAACCAGTTGAAGATCCAAAAGCTCAAGGACACAATATTTGCTGTGAACGACCAGTTAACCCGGGCTAAGAAGCAGGGGGCTTTTGCTAGCTTAATTGCAGCTAAGTCCATCCCTAAGAGCATCCATTGCCTGTCTATGAGGTTAATGGAGGAACGGATCTCACAGCCAGAAAAGTATATTGATAAAGGCGACCCTCCGCCACAGTGGGAGGACCCTAACCTCTACCATTATGCCATATTTTCCGACAATGTCATTGCTGCTTCGGTTGTCGTCAATTCTGCAGTTAAGAATGCCAAAGAACCCTGGAAGCATGTATTTCATGTCGTAACCGACAAGATGAATCTTGCCGCAATGCAGGTCTGGTTCAAGATGCGCTCGCTAAATGGATCACATGTTGAGGTTAAAGCTGTTGAGGATTACAAGTTCTTGAATTCTTCCTATGTTCCGGTTTTGCGACAGCTCGAGTCCGCTAACTTGCAAAGGTTTTACTTCGAGAATAAGTTGGAGAATGCAACAAAGGATGCTCCTAATATGAAGTTTAGGAATCCCAAGTATCTTTCCATGTTGAATCATCTGCGCTTTTATTTGCCTGAGATGTATCCAAAGTTACACCGGATCTTGTTTCTAGATGATGATGTTGTTGTTCAGAAGGACCTGACGGGATTATGGGAGATAGATATGGAAGGAAAGGTTAACGGGGCTGTGGAGACATGCTTTGGTTCATTCCATCGTTATGATAAGTATATGAATTTCTCTCATCCTCTGATCAAGGCAAGATTCAATCCCAAGGCTTGTGGTTGGGCTTATGGAATGAATTTCTTCCACTTGGATGCATGGAGAAGGGAGAAGTGTACTGAAGAATATCACTACTGGCAAAACCTGAATGAGAATCGTACATTGTGGAAGCTGGGGACATTACCACCAGGCCTGATCACTTATTATAAAACAACCAAGCCTCTAGATAAATCTTGGCATGTTCTTGGTCTTGGATATAACCCCAGTATTAGTATGGACGAAATCCGCAATGCAGCCGTTGTTCACTTCAATGGAAATATGAAACCATGGCTTGATATTGGCATGAATCAATATCGAGACACCTGGACCAAGTATGTAGACTATGATATGGAGTTTATACAGATGTGCAACTTCGGTCATTGA___AAAAAAATCTCAAGGATTTGGAGTTATTTTATTTAAGCCGGCTAACATGCCTACAATAAGGCATGGTTTTATGTTATGCTTTGTTGCTAATCATATCTCATCAAGTTGCTAAAACATTTTACGGTTTATGTAAGGAGATGTCCGAGAATGTTATAGCTTCCTTTTTAAATTTGTTTAGAGATCTGTTGTGACTTTTGTAATATTTGATTGCGCTGTTGTAAAGTTTCTACCCGTTTAATTGTTATTTGGTTCCTCAATTTATGTTGGTTCATGGGATCATGGACTAAACAGAGAACATATTTCCTTTACTTGGGAATTTATAGAGTACAATAGCAATGCACTCTGGCAGGTAGATTGTGTCATGTCATACCTGGCCAGCTGAGATGTGGCTGAGATGCAGACCTGCTTAGTTTCAAGAAGATAAGGGTTAAGAAAATAATTGGTAGAGCATCTTCTAGTATTAATAATGTTTTGATTTTTGATGTACATTAGGTGCACCTATCCAGGATGTTAATAGAATTTATGTTTTTAGGTGCATCTGTCAGGGATATTAATTGAATTCCCATGGTAAATATTG

Fln Alignment:

Contig13987___RTFLALKSDPLKTRLDLLFKQAYDHLSLINAYAAYARRLKLENMKQVRIFTDQARNYTELMNKPEYRALMDTNDM-IDEETLRQFEKEVKERIKVTRQLIADAKESFDNQLKIQKLKDTIFAVNDQLTRAKKQGAFASLIAAKSIPKSIHCLSMRLMEERISQPEKYIDKG-DPPPQWEDPNLYHYAIFSDNVIXXXXXXXXXXXXXXEPWKHVFHVVTDKMNLAAMQVWFKMRSLNGSHVEVKAVEDYKFLNSSYVPVLRQLESANLQRFYFENKLENATKDAPNMKFRNPKYLSMLNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMEGKVNGAVETCFGSFHRYDKYMNFSHPLIKARFNPKACGWAYGMNFFHLDAWRREKCTEEYHYWQNLNENRTLWKLGTLPPGLITYYKTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIGMNQYRDTWTKYVDYDMEFIQMCNFG
Q9LSG3________________RSMLDIKSDPLKPRLIQIRKQADDHRSLALAYASYARKLKLENSKLVRIFADLSRNYTDLINKPTYRALYDSDGASIEESVLRQFEKEVKERIKMTRQVIAEAKESFDNQLKIQKLKDTIFAVNEQLTNAKKQGAFSSLIAAKSIPKGLHCLAMRLMEERIAHPEKYTDEGKDRPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLESANLQKFYFENKLENATKDTTNMKFRNPKYLSILNHLRFYLPEMYPKLHRILFLDDDVVVQKDLTGLWEIDMDGKVNGAVETCFGSFHRYAQYMNFSHPLIKEKFNPKACAWAYGMNFFDLDAWRREKCTEEYHYWQNLNENRALWKLGTLPPGLITFYSTTKPLDKSWHVLGLGYNPSISMDEIRNAAVVHFNGNMKPWLDIAMNQFRPLWTKHVDYDLEFVQACNFG

SNPs (tot: 80)

Position	A %	C %	G %	T %	Probability
195	90		9		0.999842
197		90		9	0.999842
200	9	90			0.999842
206			9	90	0.999842
207		90	9		0.999842
212	8			91	0.999807
214	86		4	8	0.999539
215	86	8		4	0.999539
443			90	9	0.999842
444			90	9	0.999842
445	86	9		4	0.999642
446	86		9	4	0.999642
451		14		85	1.0
453	85	14			1.0
454	90		10		0.999898
456	90		10		0.999898
458	90	10			0.999898
460		90		10	0.999898
461		90		10	0.999898
463	90		10		0.999898
464		10	90		0.999898
466	90		10		0.999898
469	10		89		0.999919
470		10	89		0.999919
471			89	10	0.999919
536	82	17			1.0
538	81			13	1.0
539	86	13			1.0
540	81	4	13		1.0
541			86	13	1.0
544		14		85	1.0
546	85			14	1.0
547	85			14	1.0
551		85	14		1.0
552	85			14	1.0
557			85	14	1.0
708	90	10			0.90298
711	90		10		0.90298
713	10	90			0.90298
715	90	10			0.90298
719		90	10		0.90298
1054	80	6		13	0.999961
1060		78		14	0.999974
1071	85	14			0.999981
1072			85	14	0.999981
1249	11	88			0.923564
1296		14	85		0.999981
1298		10	89		0.999919
1299	84			15	1.0
1467	83			16	0.999991
1468	83			16	0.999991
1469		83	16		0.999991
1548		50		50	1.0
1748	85		5		0.999793
1811	88		11		0.999937
1814		11	88		0.999937
1949		10		90	0.90298
1950	90		10		0.90298
1951		10		90	0.90298
1952			10	90	0.90298
1956		10		90	0.90298
1960	11		88		0.923564
1963		11	88		0.923564
1964	11			88	0.923564
1979		88		11	0.923564
1988		12		87	0.992554
1990		12		87	0.992554
2023		10	90		0.90298
2024	90		10		0.90298
2027	90		10		0.90298
2030	10		90		0.90298
2031	90	10			0.90298
2034	88			11	0.923564
2035	88		11		0.923564
2036	88		11		0.923564
2038	88			11	0.923564
2041			88	11	0.923564
2042	87	12			0.992554
2045	87			12	0.992554
2046		12		87	0.992554

SSRs (tot: 2)

Start position	End position	Sequence	Length
106	117	GCT GCT GCT GCT	12
116	127	CTC CTC CTC CTC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain