SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13934

Length: 1094 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13934

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene421	21/22

Source	Descriptions	Term	Type	Identity
AutoFact	ATP-binding cassette transporter, subfamily I, member 15, ABC component protein PpABCI15 (Fragment) n=2 Tax=Physcomitrella patens subsp. patens RepID=A9RAW0_PHYPA	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	at4g04770 t4b21_16	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Pyrimidine metabolism	00240	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	cellular iron ion homeostasis	GO:0006879	Biological Process	85%
Blast2go	response to red light	GO:0010114	Biological Process	85%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	85%
Blast2go	transcription initiation, DNA-dependent	GO:0006352	Biological Process	85%
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	85%
Blast2go	response to blue light	GO:0009637	Biological Process	85%
Blast2go	cytochrome complex assembly	GO:0017004	Biological Process	85%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	85%
Blast2go	protein binding	GO:0005515	Molecular Function	85%
Blast2go	sigma factor activity	GO:0016987	Molecular Function	85%
Blast2go	DNA binding	GO:0003677	Molecular Function	85%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	85%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	mitochondrial respiratory chain	GO:0005746	Cellular Component	85%
Blast2go	chloroplast	GO:0009507	Cellular Component	85%
Blast2go	regulation of response to red or far red light	GO:2000030	Biological Process	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	SUF system FeS cluster assembly, SufB	IPR010231	-	0.0	-
Sma3	SUF system FeS cluster assembly, SufBD	IPR000825	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXW5

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 277 - 474

Fln protein: S*PWLSLNAMETGQFERTLIVADERSSVRYLEGCTAPSYDTNQLHAAVVELYCAEGAEIKYSTVQNWYAGDEEGRGGIYNFVTKRGLCDGDKSRISWTQVETGSAITWKYPSVVLKGDDTIGEFYSVALTNNYQQADTGTKMIHVGKNCRSRIVSKGISAGKSRNCYRGLVQVQPNAHNARNFSQCDSMLIGDQAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDPEKAVAAIINGFCRVVFNELPLEFAAEVNQLMSLKLEGSVG*

Protein Length: 278

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGCGATGGAGACCGGGCAGTTTGAGAGAACTCTTATTGTTGCAGATGAGAGGAGTTCTGTGAGGTATCTGGAGGGATGCACTGCGCCATCCTATGACACCAATCAGCTCCATGCCGCAGTCGTGGAGCTCTATTGCGCCGAGGGCGCAGAGATTAAGTATTCCACTGTACAGAATTGGTATGCCGGGGATGAGGAAGGCAGAGGTGGGATTTATAATTTTGTTACGAAAAGAGGTTTGTGCGATGGAGACAAATCAAGGATTTCGTGGACCCAAGTAGAGACTGGTTCAGCAATCACCTGGAAATACCCAAGCGTGGTTTTGAAAGGCGATGATACGATTGGAGAGTTCTATTCTGTTGCCTTGACAAATAACTATCAACAGGCAGATACAGGGACAAAGATGATCCATGTAGGGAAGAATTGCAGGAGTAGGATTGTTTCTAAAGGTATATCTGCAGGAAAGTCGAGGAACTGCTACAGAGGATTGGTGCAGGTGCAACCAAATGCTCATAATGCAAGGAATTTTTCACAGTGCGATTCGATGCTCATTGGTGACCAGGCAGCTGCAAATACTTATCCTTACATTCAGGTAAAGAACCCAACAGCCCGTGTTGAACATGAAGCAAGTACCTCAAAAATTGGGGAAGATCAGTTATTCTATTTCCAGCAGAGGGGGATTGATCCAGAGAAGGCAGTGGCGGCTATCATTAATGGCTTTTGTCGGGTTGTATTTAATGAGCTTCCACTAGAATTTGCTGCTGAAGTAAATCAATTGATGAGTTTGAAGCTTGAAGGCAGTGTTGGCTAG___GTGTTGCAAGGTCTCGCTGTAACACTATCTATGTACATGATTCTAATGCCATGAGATGGTGTCTCAATAACACAACTGTTTAGTGTCAGGTGCTAGATGTAGATAGCTTCCTCGTGTCCTACAGGGAAATCATATCATTATATTTTCTATGAAATCTGGGAATGCCTTCAAAGTTTGTCCTAGGTAAGGAAATATGTATGTACTCTTGAATTTATCTCTGTTGTAATGAGATTAAGAATAAAGTTGTCAATTAGTAAAAAG

Fln Alignment:

Contig13934___GDKSRISWTQVETGSAITWKYPSVVLKGDDTIGEFYSVALTNNYQQADTGTKMIHVGKNCRSRIVSKGISAGKSRNC-YRGLVQVQPNAHNARNFSQCDSMLIGDQAAANTYPYIQVKNPTARVEHEASTSKIGEDQLFYFQQRGIDPEKAVAAIINGFCRVVFNELP
A9NXW5________________GTLSSYKLVETSSGGRLSRHNLQIQQLGPDTVTEVSTFHLAGENQTQDLHSKIILNHPRGYSRQLHKCIVTHSSAHAVFDGNVKVNRHAQLTDAGQLSRSLLLAPRATVNVKPNLQIVADDVKCSHGAAISDLEEDQLFYFQARGVDAKTARNALVFSFGAEVMERFP

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
314	83	16			0.994512
316		83		16	0.994512
317	83	16			0.994512
318	83		16		0.994512
320		83	16		0.994512
325			83	16	0.994512
328	83		16		0.994512
329	83	16			0.994512
332		80	20		0.995493
333		80		20	0.995493
339			80	20	0.995493
340		20		80	0.995493
341	20		80		0.995493
449		20		80	0.995493
453	80		20		0.995493
454			80	20	0.995493
458		20	80		0.995493
460	80			20	0.995493
464		20		80	0.995493
468		20		80	0.995493
469	20			80	0.995493
504		83		16	0.994512
505			16	83	0.994512
508	83	16			0.994512
509			83	16	0.994512
510	83			16	0.994512
513	83	16			0.994512
516	16		83		0.994512
517		16	83		0.994512
519		16	83		0.994512
520	16	83			0.994512
564		60		40	1.0
591	80			20	0.995493
592			80	20	0.995493
660		70	30		1.0
663	62		37		1.0
664	62			37	1.0
665	62		37		1.0
667	62	37			1.0
668		37		62	1.0
671			62	37	1.0
674	62	37			1.0
675	62			25	1.0
681		37	62		1.0
683		37		62	1.0
730			87	12	0.992554
733	87		12		0.992554
735		87	12		0.992554
738		12		87	0.992554
739	87	12			0.992554
740	87			12	0.992554
747		12		87	0.992554
748	12			87	0.992554
749		12	87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain