SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13896

Length: 1526 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13896

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene804	33/36

Source	Descriptions	Term	Type	e value	Identity
AutoFact	coatomer subunit alpha-1 [Arabidopsis thaliana] sp\|Q94A40.2\|COPA1_ARATH RecName: Full=Coatomer subunit alpha-1; AltName: Full=Alpha-coat protein 1; Short=Alpha-COP 1 gb\|AAC28519.1\| Strong similarity to coatamer alpha subunit (HEPCOP) homolog gb\|U24105 fro	-	-	0.0	77%
FL-Next	sp=Coatomer subunit alpha-3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	48%

Source	InterPros	Term	Type	Identity
Sma3	Coatomer alpha subunit	IPR016391	-	-
Sma3	Coatomer, alpha subunit, C-terminal	IPR010714	-	-
Sma3	Coatomer, WD associated region	IPR006692	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0J3D9

Fln msg: your sequence is shorter than subject: 280 - 1218

Fln protein: RRDLGCHSNFAPL*PLFLDLYLGSHTYLPAFVSAPVVSLALERGWSETASPNVRGPPALVFRFSLLDEKLRVAYKATTEGKFSEALRLRRDLGCHSLLL*IQEGRLMK*RN*LELLKNMFWVFGWRSRERKLRMMLFDSKSLQPTLLIATFKRSI*GWLC*MPWVFATREGTSIQLLTLLDDCWRVNPLQTMQQRPDKFCRHVRGSCRMPKKLNYDFRNPFVVCGATFTPIYRGQKDVSCPYCTARFVPSVQGNLCPICELAVVGTDASGLLCSTTQIR*

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTTTGCTCCGTTGTGACCTTTGTTTTTGGATCTTTATCTGGGCAGCCATACATACCTTCCTGCATTTGTTTCTGCACCTGTGGTCTCCTTGGCATTAGAGAGAGGCTGGAGTGAGACTGCTAGCCCAAATGTCAGAGGTCCACCTGCTTTGGTATTTAGGTTTTCTTTATTAGATGAGAAACTCAGAGTAGCTTACAAAGCCACCACAGAGGGGAAGTTTAGTGAAGCATTGAGGTTACGTCGTGACCTTGGCTGTCACTCATTATTGTTGTAGATTCAAGAAGGGAGGTTGATGAAGTGAAGGAATTGATTGGAATTGCTAAAGAATATGTTCTGGGTCTTCGGATGGAGGTCAAGAGAAAGGAAGTTAAGGATGATGCTGTTCGACAGCAAGAGCTTGCAGCCTACTTTACTCATTGCAACCTTCAAAAGGTCCATTTGAGGTTGGCTTTGCTGAATGCCATGGGTGTTTGCTACAAGGGAGGGAACTTCAATACAGCTGCTAACTTTGCTCGACGACTGCTGGAGAGTGAACCCCCTGCAAACCATGCAACAAAGGCCCGACAAGTTCTGCAGGCATGTGAGAGGCAGTTGCAGGATGCCAAAAAAACTGAATTATGACTTTAGAAATCCTTTTGTTGTTTGTGGAGCAACTTTCACACCCATTTACCGTGGTCAGAAGGATGTCTCCTGTCCATATTGTACAGCACGCTTTGTTCCAAGTGTACAAGGGAATCTCTGCCCTATATGTGAGCTTGCAGTTGTGGGTACTGATGCTTCTGGGTTGCTTTGCTCAACTACTCAGATAAGGTGA___TGTCAGCAGCATTGGATTCTTGCTGACAATGCATTTTTATTTCAAGAAGTTCCATTGCCTGCGTATATGTCCGGATTGATGCTGTACTCTCTGCCTTTGAGAACCACGTTGAGAGATATGCCAGGACAATTTGTAACAAGTCTTGGACAAACTTGAGGGCCTTCTTAAGATATTGGAAGAAACAGTATATTGAAACTGAAATGAGGGTAGAAGTAATTTTCCATGTTTTTTCATTGTTTACTATTTGAAATTTAAGTCTGGTTTTTTGCTTCCCTTTACCAGTCTCATACAATGAAAAGTGTGAGTCCTTTAGCTTATGTCTGGAGAATTTCTGATAGACACCAGGGTGTTTATCTTGTCTTTATCATGCAGATTTTCCAGTGGTTTGTCTGAGTATAAACAATAATTAGGCTTTTATTAGGCAACCTCAAGAAGTTACATTTAGGTTTTCACATTAAATTGAATTGCTTGGAAGCTTCTTCCAGCTGTAGATTACTTCAATCCCTTAATTTTAAAGGTCTCTGTCAATTAATTTAACTGTTTAATTGCATAGATGGTTTTACATGGTGTTCTTTGTGTAATGAAATGAGTTCTTAAATGAGCTCTATGCTGGTTGTTGTTGAAGAAAGACAAAGCATAGGTATGTAATGTTTTCACATTTGGTATTCTTACGAGGAGCATTTGCT

Fln Alignment:

Contig13896___RDLGCHSNFAPL*PLFLDLYLGSHTYLPAFVSAPVVSLALERGWSETASPNVRGPPALVFRFSLLDEKLRVAYKATTEGKFSEALRLRRDLGCHSLLL*IQEGR--LMK*RN*LELLKNMFWVFGWRSRERKLRMMLFDSKSLQPTL--------LIATFKRSI*G---WLC*MPWVFATREGTSIQLLTLLDDCWRVNPLQTMQQRPDKFCRHVRGSCRMPK---KLNYDFRNPFVVCGATFTPIYRGQKDVSCPYCTARFVPSVQGNLCPICELAVVGTDASGLLCSTTQIR
Q0J3D9________________RQLGI-KNFAPLKPLFLDLHMGSHSYLRALATAPIIPVAVEKGWSESASPNVRGPPALVFTFSQMEDRLKAAYKATTEGKFPEALRQFLNI-LHTIPLIVVDSRREVDEVKELIEIVRE--YVLGLRMELK--RKELRDDVNRQQELAAYFTNCKLQRVHMRLVLGSAMGLCYKQKNFATAEHFARMLL-------ENNPNESQAKR----ARQVQQQCSGKKDSCELNYDYRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSIEGQLCTICELAVVGADASGLLCSPTQLR

SNPs (tot: 84)

Position	A %	C %	G %	T %	Probability
55		16		83	0.994512
56			83	16	0.994512
57		16	83		0.994512
212		50		50	1.0
267		75		25	0.996473
268			75	25	0.996473
273			75	25	0.996473
281			75	25	0.996473
284	25			75	0.996473
285		25	75		0.996473
286	25			75	0.996473
289	25	75			0.996473
513		25	75		0.996473
515			75	25	0.996473
516	75	25			0.996473
518			80	20	0.995493
521	80	20			0.995493
525		80	20		0.995493
526	80		20		0.995493
527	80	20			0.995493
529	80			20	0.995493
561	40		60		1.0
635	25	75			0.996473
637	75	25			0.996473
647	85	14			0.993533
648	85		14		0.993533
650		14		85	0.993533
651	85		14		0.993533
656		14		85	0.993533
659	83		16		0.994512
661	83	16			0.994512
662	80			20	0.995493
663	80		20		0.995493
669	20			80	0.995493
672			80	20	0.995493
675		16	83		0.994512
676			16	83	0.994512
678		16		83	0.994512
684		16	83		0.994512
686	83		16		0.994512
687	83		16		0.994512
690			16	83	0.994512
696		83		16	0.994512
698	16	83			0.994512
797		14		85	0.993533
799			14	85	0.993533
800		28	71		1.0
801			85	14	0.993533
802			85	14	0.993533
803			14	85	0.993533
806		14		85	0.993533
807		14	71	14	0.984337
808	85			14	0.993533
809			14	71	0.984337
816	16		83		0.994512
817		16	83		0.994512
818			83	16	0.994512
819		16		83	0.994512
820	16			83	0.994512
841		14		85	0.993533
842	85		14		0.993533
843	85			14	0.993533
844		14	85		0.993533
849		14		85	0.993533
850		14	85		0.993533
852		85		14	0.993533
853	85		14		0.993533
856	85			14	0.993533
1011	10	90			0.90298
1012			10	90	0.90298
1015			10	90	0.90298
1021		10		90	0.90298
1022	90	10			0.90298
1027	90	10			0.90298
1028	90			10	0.90298
1030	90			10	0.90298
1031	90	10			0.90298
1034	90	10			0.90298
1035	10		90		0.90298
1148	88	11			0.923564
1155		11	88		0.923564
1157		88	11		0.923564
1161		11		88	0.923564
1163			88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain