SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13868

Length: 571 nt

UniGene Fasta

>uagpf_v2_unigene13868
CGTCGTGACCTTGGCTGTCACTCAGTAGAAATTAATTGAAGCACTCCCTCAGCTCCGCTTCGGCAGGTCTTGGGTTCGATTCCCCATCTATTTTTGCAAATTGTTCATCATAGATCATTCTGGTTCAAGCCATTTCAAGCATCGGAAGGCGGGTTTCAGCAGGCAAACTTTTTCAAGGCCAAAGTTTCTGCAAATCCTTCAATGTCTGTAGGATTTTGTTAAAGATCGACTGTCTGTGGTCATTCTGTCAGTAGTTCCCTCGGGTGCAGGCTCAGTTAGCGAGGATAGACGAGGTATCCAGGTGCAATTGACAACACTCAAGGGTTTTACGATCCTGTTCATATTCATTTTTAAATCATTGCCAAAGTTCAACAAAATGAATGATCTTCTCACAAGGTCTTGGAACAATTATGTGGATCTCAAACGTGCAGCCTTGAAGGAGGACCTTGAGGCTGGTCCTGAGATGGAGATGGTAGACTTGGAGACTGAACAAAATCTTGGACAGTTTTTGAAGAAGTCAGTGGTATAAAAGCAGACATGGAAACTATCAAGGAACTTCTTGAGAAGCTGC

Ace file of the UniGene uagpf_v2_unigene13868

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2439	2/5
SustainPine v2.0	sp_v2.0_unigene61011	1/5
SustainPine v2.0	sp_v2.0_unigene68378	2/5

Source	Descriptions	Term	Type	Identity
AutoFact	Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SNS7_PHYPA	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	48%
Blast2go	qa- sso1 syntaxin1- syp12a-group	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	78%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	78%
Blast2go	SNAP receptor activity	GO:0005484	Molecular Function	78%
Blast2go	membrane	GO:0016020	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	-
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Tyrosinase	IPR002227	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Cytidylyltransferase	IPR004820	-	-
Sma3	Cytidyltransferase-related	IPR004821	-	-
Sma3	Syntaxin, N-terminal	IPR006011	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Uncharacterised domain, di-copper centre	IPR008922	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: A5C5S9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 232 aas, your sequence is shorter than subject: 51 - 298

Fln protein: MNDLLTRSWNNYVDLKRAALKEDLEAGPEMEMVDLETEQNLGQFLKKSVV*

Protein Length: 52

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAGAAATTAATTGAAGCACTCCCTCAGCTCCGCTTCGGCAGGTCTTGGGTTCGATTCCCCATCTATTTTTGCAAATTGTTCATCATAGATCATTCTGGTTCAAGCCATTTCAAGCATCGGAAGGCGGGTTTCAGCAGGCAAACTTTTTCAAGGCCAAAGTTTCTGCAAATCCTTCAATGTCTGTAGGATTTTGTTAAAGATCGACTGTCTGTGGTCATTCTGTCAGTAGTTCCCTCGGGTGCAGGCTCAGTTAGCGAGGATAGACGAGGTATCCAGGTGCAATTGACAACACTCAAGGGTTTTACGATCCTGTTCATATTCATTTTTAAATCATTGCCAAAGTTCAACAAA_-_ATGAATGATCTTCTCACAAGGTCTTGGAACAATTATGTGGATCTCAAACGTGCAGCCTTGAAGGAGGACCTTGAGGCTGGTCCTGAGATGGAGATGGTAGACTTGGAGACTGAACAAAATCTTGGACAGTTTTTGAAGAAGTCAGTGGTATAAAAGCAGACATGGAAACTATCAAGGAACTTCTTGAGAAGCTGC

Fln Alignment:

Contig13868___MNDLLTRSWNNYVDLKRAALKEDLEAGPE--MEMVDLETEQNLGQFLKKSVV*KQTWKLSRNFL
A5C5S9________________MNDLMTKSFTSYVDLKKEAMK-DLEAGPEYDLQMSGTQMDRNLGLFLEEAEKVKQEMGLIREIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain