SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13866

Length: 1211 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13866

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5443	26/33
SustainPine v2.0	sp_v2.0_unigene34521	2/33
SustainPine v2.0	sp_v2.0_unigene68077	3/33

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS [Pinus taeda]	-	-	5.0e-13	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	protein	-	-	2.03738e-17	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stimulus	GO:0050896	Biological Process	2.03738e-17	58%

Source	InterPros	Term	Type	e value	Identity
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PPX1

Fln msg: your sequence is shorter than subject: 212 - 1011

Fln protein: VVTLAVTHIYLERLAHLMSTLCSVEIWSCSKPDHPDLVRDWPFLQLSLARCSIVERLLYRFGELKSLRVLNLQDCWLLKKLPEGLGQLNFLVELDLSFCCSLEDLCTNFHLLPSLQILNLTSCESLKKLPKKFHLLVSLQFLNLEFCKSLEGKSMDNVIKCEKLEKLFIEGSPMLEERWEAMKMESYESSSLVVHTKGEGTSDKDNRASQL*

Protein Length: 213

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTATCTAGAAAGACTTGCACATCTTATGTCGACTTTGTGCTCGGTGGAGATTTGGTCTTGTTCAAAACCAGACCATCCAGATTTGGTGCGGGATTGGCCCTTTCTACAGTTATCATTGGCTCGGTGTAGCATTGTAGAGAGGCTTCTTTATCGATTTGGGGAATTAAAAAGCTTAAGAGTGTTAAACCTCCAAGACTGTTGGCTGCTAAAGAAACTTCCGGAAGGTTTAGGTCAACTCAATTTTTTGGTGGAGCTGGATTTATCATTCTGCTGCTCGCTTGAAGATTTATGTACAAATTTTCATTTACTTCCATCATTGCAAATCTTAAACTTGACTTCCTGTGAAAGTCTAAAGAAGCTCCCGAAAAAGTTCCATCTTCTGGTCTCATTGCAATTTCTGAATTTGGAGTTTTGTAAGTCACTGGAAGGGAAATCGATGGACAACGTGATAAAATGTGAAAAATTAGAGAAGCTGTTCATTGAAGGAAGTCCAATGTTGGAGGAGAGATGGGAAGCAATGAAAATGGAAAGCTATGAATCTTCGTCTCTTGTAGTACATACAAAGGGGGAAGGTACTTCAGACAAGGATAACCGAGCCTCTCAGCTGTGA___AAAGGAATGCACTGAATACCATGACATTATTTATATTCCTGGATTTGGTGAGTGAAGACACTGGAGTTGCCGTGGCTTACCGGCTTGCATTCAGTCGGATTGCTCGTCGGATAACCCTCAGATAAAGCTCGAGATGTCAACAAAGTTTATCGGGGAAATGCGTTTGTTAAATTTATCAGTTTTTAGATTCCTCTTTGCTTTTTAAAATATAGGGTAGTTACTGTTTGGAAAAGGAAGAGATTGGGTTTTTGAGGAGCACAGTGATGGAATTGATAATGAAAGAACCCTTAGAAAACAGGTGTCACAAATGTGAGTAAACCTATGCATAAACCTTGGACTGCTCCTCTGTTTTGGCTTGACGGCTTTTGAACTGCTGATGGATGGATCTGGTATATTTTGATTTTTATGTTCCTGTATGTAGATGTGGGGAATTTTTCTTTTTTTGGTTTTGTGCTTGAATCTGAAATTCTGTCAGTAAGGTATTGAAATTTTTTCTGGATTTTTATTGTAAATTCTGTCTGCAAGATATTGAGAATTTTTCTGAATGTTTATTGTAAAATACATGGGTGTATGC

Fln Alignment:

Contig13866___ERLAHLMSTLCSVEIWSC-SKPDHPDLVRDWPFLQ-LSLARCSIVERLLYRFGELKSLRVLNLQDCWLLKKLPEGLGQLNFLVELDLSFCCSLEDL------------------------------------------CTNFHLLPSLQI-------LNLTSCESLKKLPKKFHLLVSLQFLNLEFCKSLEGKSMDNVIKC-EKLEKLFIEGSPMLEE
C0PPX1________________ENLGDLVNGLQELTLSYCKSIKELPPSISKLQLLRVLRMDYCSSLMKVPEGLGSLNSLQELNFQGCTNLRKLPNSLGKLFSLRILDLSSCEKLKELPHGIENLTSLVNLSFHKCASLRSIPESIGRLKSSAFSMDMSCCSSLRELPNLFVELGNLRELNLSDCTSLEKLPKGFTQLKYLVKLNLSKCGAL--KELCNEFHCLLSLEILDLSGCKMLEE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
434	83			16	0.999991
435	83	16			0.999991
436	11			77	0.968132
437		11	11	77	0.968132
440		11	88		0.923564
442		12	75	12	0.975346
444		12		87	0.992554
448			12	87	0.992554
449	87	12			0.992554
450	87			12	0.992554
642			75	25	0.996473
643		25		75	0.996473
645	66	33			0.997452
729			66	33	0.997452
731			33	66	0.997452
735	66	33			0.997452
738		66	33		0.997452
739	66		33		0.997452
740		33	66		0.997452
742		66	33		0.997452
743			66	33	0.997452
744		33	66		0.997452
746		33		66	0.997452
750	33			66	0.997452
844	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain