SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13863

Length: 1594 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13863

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6838	46/49
SustainPine v2.0	sp_v2.0_unigene24099	3/49

Source	Descriptions	Term	Type	Identity
AutoFact	vacuolar protein sorting-associated protein 24-1 [Arabidopsis thaliana] sp\|Q9FFB3.1\|VP241_ARATH RecName: Full=Vacuolar protein sorting-associated protein 24 homolog 1; Short=AtVPS24-1; AltName: Full=Charged multivesicular body protein 3 homolog 1; AltName	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	vacuolar protein sorting-associated protein 24 homolog 1-like	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	84%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	84%
Blast2go	ESCRT III complex	GO:0000815	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Snf7	IPR005024	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA16

Fln msg:

Fln protein: MEAVKAILKPRPTPQQQMREWQRRLKQECRNIDRHIRDIQREEKRVQKEVKDAAKRNDMTSAKNLAKEIVRSRQAVQRLYENRAQLNSISMHLGESVATARAVGHLSKSTEVMKLVNGLMKAPEVAATMQEFTTEMTKAGVIEEVVNDSLDSALDSEDIEEETEEEVDKVLTEIAGETAAQLPAAARREKIKQPAQKEKQKEEEQPVAEGVDDEQELEEIRARLANVRG*

Protein Length: 231

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCCAAGGCCCTGTCAGTCCCCACTAAACCCGCGAATCAATACGCCTTTCTTTTCCAACACTGCACGACCCCTTTGCTTCAGAATTGTAATGTTATTATCCTCCCAGGAGCGGGTTCGATCCACGCAGAGTTCGGATCAGGATCTCAGATAATTGTCTGTTATTTTTTCGAACACCACA_-_ATGGAGGCCGTCAAGGCAATCTTAAAGCCGAGGCCAACTCCACAGCAACAAATGCGCGAGTGGCAGAGACGCCTCAAACAGGAGTGTAGGAATATTGATCGCCATATTCGCGATATTCAGCGTGAAGAAAAAAGAGTACAGAAAGAAGTCAAGGATGCAGCAAAGCGGAATGACATGACGTCGGCAAAGAATTTGGCAAAAGAAATTGTAAGATCGAGGCAAGCTGTTCAGCGCCTTTATGAGAACAGGGCACAGCTGAATTCGATATCTATGCACCTTGGAGAAAGTGTTGCAACTGCTCGGGCTGTTGGACACTTGTCAAAAAGTACTGAGGTGATGAAGCTCGTGAATGGCCTCATGAAGGCTCCAGAAGTGGCTGCCACAATGCAAGAATTCACCACAGAGATGACTAAGGCAGGAGTCATTGAGGAGGTGGTGAATGATTCCCTGGATTCTGCACTTGACTCTGAGGATATTGAAGAAGAAACTGAAGAGGAAGTTGACAAAGTATTAACTGAAATTGCTGGGGAGACAGCGGCACAGCTACCTGCAGCTGCAAGAAGAGAGAAGATTAAGCAGCCTGCTCAGAAGGAAAAACAGAAGGAAGAGGAACAACCTGTTGCTGAGGGCGTTGATGATGAACAAGAACTGGAAGAGATAAGGGCACGACTTGCAAATGTTCGTGGATAA___ATAAAGACCATTTGTATGTGGAAACAGAAAAAAAGTTATGCCTGTGTTTAAATATCTTGTAACTGTTTGTAGTATATCCCATGCATCTACAGTTTGCAACATTATGGTATGCACAGATATCCATTTTACTGGTTGATGAAAAAGCCACTAAGCAGAACAAGATAACATAGAAGAGCCGTTGGGTTACTATTGTCCACAAGTCCAATTTAATATGCCAGCAATTAGCATTCCCTTCCGATGTTCAGGATATTGTTGATCACAGTATAATCACTCGCTTTATCTTCTTGCTTCATGATATTGTTGGATATAAGTTATGTATTGCATAACCACCCGCTTTATCTTTTCATTAAGACATCCACGAGCAACACCATTTATCGATTTAATTTGTATGTTAGCTTCCAAATGACATGCATTTAAAATGCTAATCCATCTGTGTTATCAGAGGAAACATCAACGACTGCATGTTACAAGTTTGATGGATCAATATCTGTAGGTATCTGGAATATCAACATTTCAGGATTAATTATTACGCCTAATATTACGGGCTTGGACTCCATTAAATGGATATCTGAGTATTTGAACACATTGAGCAATGATTTCTTCTGATATCTCAGTATTTGAAAAAATTCATTCAGAGCAGCTTATATACGCTGTGTTATGTGAACTGTGGTCTGCACAAACTAACTAAAATGCCATTTAAC

Fln Alignment:

Contig13863___RPTPQQQMREWQRRLKQECRNIDRHIRDIQREEKRVQKEVKDAAKRNDMTSAKNLAKEIVRSRQAVQRLYENRAQLNSISMHLGESVATARAVGHLSKS-TEVMKLVNGLMKAPEVAATMQEFTTEMTKAGVIEEVVNDSLDSALD
D5AA16________________KKTPAELLRENKRMLDRSIREIERERQGLQNQEKKLIAEIKKTAKQGQMAAVKVMAKDLIRTRHQITKFYALKSQLQGISLRI-QTLKSTQSMGEAMKGVTKAMRQMNRQMNLPALQKIMQEFERQNERMEMVTEVMGDAIDDALE

SNPs (tot: 97)

Position	A %	C %	G %	T %	Probability
389			80	20	0.999996
392	80		20		0.999996
393	80			20	0.999996
396	80	20			0.999996
397		20		80	0.999996
403	77		22		0.999999
404	77			22	0.999999
405	77	22			0.999999
407		22	77		0.999999
408	77			22	0.999999
409	77	22			0.999999
575		69	30		1.0
576	69			30	1.0
580	69	30			1.0
581			69	30	1.0
588		66		33	1.0
625	90			10	0.90298
626		10	90		0.90298
628	90			10	0.90298
630	10			90	0.90298
632	90	10			0.90298
638		10	90		0.90298
639	90			10	0.90298
641			90	10	0.90298
642		10		90	0.90298
643	10		90		0.90298
644		10	90		0.90298
646	10		90		0.90298
660	78	21			1.0
661			21	78	1.0
667	21	78			1.0
668	78	21			1.0
673	78		21		1.0
676		78	21		1.0
678		21	78		1.0
681			78	21	1.0
682		21	78		1.0
788	84			15	0.999986
910	88		11		0.923564
911	11			88	0.923564
913			11	88	0.923564
918		11		88	0.923564
919		11	88		0.923564
921			88	11	0.923564
923	88		11		0.923564
924	88	11			0.923564
925	88			11	0.923564
926		88	11		0.923564
927	87			12	0.992554
928		12	87		0.992554
930	80	20			0.995493
931	80			20	0.995493
932	80	20			0.995493
940		33		66	1.0
941			83	16	0.994512
943	16	66	16		0.988813
946	16			83	0.994512
947		16	83		0.994512
948		16		83	0.994512
951	83		16		0.994512
952	83		16		0.994512
953	83	16			0.994512
955	83		16		0.994512
959	16			83	0.994512
960		16	83		0.994512
962	83	16			0.994512
986	85		14		0.993533
995		14	85		0.993533
998			14	85	0.993533
1002	85		14		0.993533
1003	85			14	0.993533
1006		14		85	0.993533
1008	85	14			0.993533
1009	14			85	0.993533
1063	87			12	0.992554
1064	87	12			0.992554
1066	87			12	0.992554
1067			12	87	0.992554
1069	87	12			0.992554
1071	87			12	0.992554
1073	87		12		0.992554
1075	87	12			0.992554
1076	87			12	0.992554
1078	87			12	0.992554
1079		12	87		0.992554
1080	12	87			0.992554
1082			87	12	0.992554
1083		12		87	0.992554
1084	12			87	0.992554
1180	6		13	80	0.999961
1182			13	86	0.999973
1184		13		86	0.999973
1190			14	85	0.999981
1198		15	84		0.999986
1199	84			15	0.999986
1200		15		84	0.999986
1226		69		30	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain