SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13832

Length: 395 nt

UniGene Fasta

>uagpf_v2_unigene13832
CGTCGTGACCTTGGCTGTCACTCAAATATTCTAAAACAGAAGCTAGCTGATGCTCCATCAATTGCAGTTGCAACAAATAATCTCATTGCACTGAAGGGTGCCAAGGATGTGTTTGATGGATTAAAGAAGTTTGACAAATTAATTGACAAGAGTGGTGGAGTTCAAGGATTACAGCTTGCTGATAGCCTTGAGTATAAGCTTTCTGCTAGACAGAAGGAAGCAATTTACTGTAATCGTGCACTGCTGTTACTAAATGCAAACAAGTTAGATCAGGCTCGGGAACTTATATTGACCCTTATCAACATGTTCCCAGATAGCGTGACACCGACTTTACTTCAAGCATCGTTGTTAATCAAAGAGAACAAATCTAATCAAGCAGAAGAACTTTTAGGAAA

Ace file of the UniGene uagpf_v2_unigene13832

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10170	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Signal recognition particle subunit srp72, putative n=1 Tax=Ricinus communis RepID=B9RMK3_RICCO	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	56%
Blast2go	signal recognition particle subunit srp72	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	71%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	71%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Signal recognition particle, SRP72 subunit, RNA-binding	IPR013699	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HG38

Fln msg: Distance to subject end: 294 aas, your sequence is shorter than subject: 131 - 673

Fln protein: RRDLGCHSNILKQKLADAPSIAVATNNLIALKGAKDVFDGLKKFDKLIDKSGGVQGLQLADSLEYKLSARQKEAIYCNRALLLLNANKLDQARELILTLINMFPDSVTPTLLQASLLIKENKSNQAEELLG

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATATTCTAAAACAGAAGCTAGCTGATGCTCCATCAATTGCAGTTGCAACAAATAATCTCATTGCACTGAAGGGTGCCAAGGATGTGTTTGATGGATTAAAGAAGTTTGACAAATTAATTGACAAGAGTGGTGGAGTTCAAGGATTACAGCTTGCTGATAGCCTTGAGTATAAGCTTTCTGCTAGACAGAAGGAAGCAATTTACTGTAATCGTGCACTGCTGTTACTAAATGCAAACAAGTTAGATCAGGCTCGGGAACTTATATTGACCCTTATCAACATGTTCCCAGATAGCGTGACACCGACTTTACTTCAAGCATCGTTGTTAATCAAAGAGAACAAATCTAATCAAGCAGAAGAACTTTTAGGAAA

Fln Alignment:

Contig13832___HSNILKQKLADAPSIAVATNNLIALKGAKDVFDGLKKFDKLIDKSGGVQGLQLADSLEYKLSARQKEAIYCNRXXXXXXXXXXDQARELILTLINMFPDSVTPTLLQASLLIKENKSNQAEELLG
F6HG38________________YTGIINRNLADESSLAVAVNNLVALKGPKDISDSLRKLDRLMEKGNGAQSFQLSNGLESKLSPKQRETIYTNRVLLLLHANRMDQARELVAALPDMFADSVMPVLLQAAVLVRENKSGKAEEILG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
156		25		75	0.996473
157	25		75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain