SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene13805

Length: 1692 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene13805

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10001	11/12

Source	Descriptions	Term	Type	Identity
AutoFact	[R] COG2319 FOG: WD40 repeat	-	-	43%
FL-Next	sp=Flowering time control protein FY; Arabidopsis thaliana (Mouse-ear cress).	-	-	77%
Blast2go	flowering time control protein fy	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Histone acetyltransferase.	EC:2.3.1.48	-	0.0	81%

Source	GOs	Term	Type	Identity
Blast2go	regulation of flower development	GO:0009909	Biological Process	81%
Blast2go	histone acetylation	GO:0016573	Biological Process	81%
Blast2go	mRNA processing	GO:0006397	Biological Process	81%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	histone acetyltransferase activity	GO:0004402	Molecular Function	81%
Blast2go	CUL4 RING ubiquitin ligase complex	GO:0080008	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Aldose 1-/Glucose-6-phosphate 1-epimerase	IPR008183	-	-
Sma3	Glycoside hydrolase-type carbohydrate-binding, subgroup	IPR014718	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: Q6NLV4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 236 aas, putative chimeric sequence, your sequence is shorter than subject: 64 - 647

Fln protein: VVTLAVTQAIIHWLVGHEVPQVEVPNAHESGVWDLAWHPMGHILCSGSNDHTTKFWCRNRPGV*

Protein Length: 65

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCCATTATTCACTGGCTTGTTGGACATGAAGTTCCTCAAGTTGAAGTACCCAATGCCCATGAGAGTGGAGTATGGGACCTTGCGTGGCATCCTATGGGTCACATCCTCTGCAGTGGGAGTAATGATCATACAACAAAGTTTTGGTGCAGAAACCGTCCAGGTGTCTGA___GCTTGGCTGTCACTCTTCATACATACCAGGCTCAAGTGAACAAAATATTGTTCTGGGTCGTTCATCCAACAATTTTCAGACATCAGAAGGTCCAACTACCCCGGGACCATTTGCAGCAGGAGGAACAATGCGTGGCGAAGGAACAATTCCAGGTGTCGGTGCAGCTATGCCTCTGTCACTTCCAACACTTGATACAACCCCACAGGCAGAACAACCACAACAATCTGTGTTGGGCTCAGCTCCCCCAGGAGTTCATCCAGGAGGTCCTCATCCTCCATTTGCTCCTCATCCTTCTATTGCTACATCTACTCAACAAATGTATCAGCAAACACAACAGCAACAGCAGCATCAGATGGGTCATCTGCCACACTCCACCTCCACCATTACCACCCCAACCACCCCATTTGCAACAGCAGCAGCAGCAGCAACTACAGCATCCACAACAAGTACAAGCTCCTCCAATGCCTTTAGGATTACATCCACATCCACCGCCACCACCTCGACCGCCATTACCACAACCTCCTCAAATAGGAATGCCATCTTCTATGCCTGTTTCAATGCCATCATCACTGCCAAATGCAGTGGTGTCGGCAGAGTCTATGCTTCCAAGACCAGGACCTAATTTGTCCTCAGCTCATATGCTTCATTCCAGTCAATATTCTTCCATGGTATCATTGCCAGGACAATTAGCCCAAGGTTCATCAAATCAAATTATAACTCAAGTACCTCAATCTCATGCGCTTGGGCAGGTTTCTGTGTCAAACCTTCCAACTGGCATAGGAGGCTTTTTGAATGGTGTTACAAGTGTTTTGGAAAGTCAAAATCCTGTTTCTGGAGCTCCTCCTTTTCCATCTAACACAGTTGGCATGCAGCCTCTACCTCCAGCAGTAATTACATCAACTTCTGGAACATACAACAGGCCGCAAAGTGGACCATTACCACCGGTGTCAATATCTCCAGTGCTCAATACGTACCAGTCAGCTGCTGCTCAAAACATGATGGATGTGAGGGGGCCCGGTACAAACCTAGGAACGAATGTTGGTCTTGGGATGGGAATTGGCATGGGTGTTCCACCTCACCCTCATGGTCCCACACCACCTCAAATGTGATGATTAGTCACTCGAAATTGGTTATTCAAAACGCTAAACCTAAACTGTAGAGTTTTGCCCCATGGAATGTAGTCCTGACTCCCATGCTTCCGAAGTTTTTGTGGGAGACTGTAAGACTTTATATCAACATTTGTTGTAATTTGAGCTACAAATCTTGAATTCTTGTCAAATAGACTAGGTAGATTATTTCTTTTTAGTTTTAGAAACACCAATCATACTCAGCAATTGTGGGCATGTTTTACGAATCACTTAGACAGTGTTCTCCACTTTTCTAAGCACAACAGTATTGTCTGTTGCCATTTTAATGAATGGGTTCCACGCGTACTAAAACGAGGCAGAATTTCCTGAAAAGCAACTGTTTCATGATTGCAGGACAATTTTGGTGATGAT

Fln Alignment:

Contig13805___AIIHWLVGHEVPQVEVPNAHESGVWDLAWHPMGHILCSGSNDHTTKFWCRNRP
Q6NLV4________________SICHWIVGHENPQIEIPNAHDNSVWDLAWHPIGYLLCSGSNDHTTKFWCRNRP

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
1245		25	75		0.996473
1247	75			25	0.996473
1248		25		75	0.996473
1250			75	25	0.996473
1254	75	25			0.996473
1261	75		25		0.996473
1263		25	75		0.996473
1264	25		75		0.996473
1265		25	75		0.996473
1268	25		75		0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
604	620	CAG CAG CAG CAG CAG CA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain